SRR3553682_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3553682_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	597707
Sequences flagged as poor quality	0
Sequence length	51
%GC	51

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1005	0.16814258491200537	No Hit
ATTCCTCCAGATCTCTACGCATTTCACCGCTACACCTGGAATTCTACCCCC	949	0.15877344585223194	No Hit
GGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT	814	0.1361871284759924	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCAGCGTCTATCGTATGCCG	607	0.10155477516575848	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	598	0.10004902067400917	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACGCCTC	45	3.8380676E-10	45.000004	45
GCGAAGT	30	2.163746E-6	45.000004	1
AATCTCC	25	3.8885504E-5	45.000004	24
GATCTCG	25	3.8885504E-5	45.000004	13
ATTACGG	20	7.0305663E-4	45.0	2
TGCGACC	20	7.0305663E-4	45.0	13
CCGACCG	40	6.8048394E-9	45.0	15
CGGTCTA	20	7.0305663E-4	45.0	31
GCTCGAC	20	7.0305663E-4	45.0	21
GGTTAGT	20	7.0305663E-4	45.0	9
GCGTATG	55	1.8189894E-12	45.0	1
TACACCG	20	7.0305663E-4	45.0	1
AAGCTAC	85	0.0	42.352943	8
CTAACGG	60	3.6379788E-12	41.250004	2
ACGTAGG	60	3.6379788E-12	41.250004	2
CGTTTAT	60	3.6379788E-12	41.250004	39
GCGAATG	55	6.002665E-11	40.909092	1
CGTAAGG	105	0.0	40.714287	2
ATGGTCA	305	0.0	40.573772	13
CGGTAGT	50	1.0804797E-9	40.500004	12