SRR3553676_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3553676_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	582865
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	4608	0.7905775779983357	No Hit
CCTGTCTCTTATACACATCTGACGCTTCTCTGCTCGTATGCCGTCTTCTGC	3172	0.544208350132535	TruSeq Adapter, Index 23 (95% over 24bp)
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2087	0.35805889871582613	No Hit
GCTGTCTCTTATACACATCTGACGCTTCTCTGCTCGTATGCCGTCTTCTGC	2013	0.3453629914302626	TruSeq Adapter, Index 23 (95% over 24bp)
CTGTCTCTTATACACATCTGACGCTTCTCTGCTCGTATGCCGTCTTCTGCT	1547	0.26541308879414616	Illumina Single End Adapter 1 (95% over 22bp)
ATTCCTCCAGATCTCTACGCATTTCACCGCTACACCTGGAATTCTACCCCC	1451	0.2489427225858475	No Hit
AAAACTGTCTCTTATACACATCTGACGCTTCTCTGCTCGTATGCCGTCTTC	1221	0.2094824702117986	TruSeq Adapter, Index 23 (95% over 21bp)
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCTTCTCTGCTCGTATGCC	1194	0.20485017971571462	No Hit
TCTGTCTCTTATACACATCTGACGCTTCTCTGCTCGTATGCCGTCTTCTGC	1031	0.17688487042454085	TruSeq Adapter, Index 23 (95% over 24bp)
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1006	0.1725957125577964	No Hit
ACTGTCTCTTATACACATCTGACGCTTCTCTGCTCGTATGCCGTCTTCTGC	967	0.16590462628567507	Illumina Single End Adapter 1 (95% over 21bp)
AAAAACTGTCTCTTATACACATCTGACGCTTCTCTGCTCGTATGCCGTCTT	713	0.12232678235955152	No Hit
CGCTGTCTCTTATACACATCTGACGCTTCTCTGCTCGTATGCCGTCTTCTG	641	0.10997400770332752	No Hit
CGTTCTGTCTCTTATACACATCTGACGCTTCTCTGCTCGTATGCCGTCTTC	632	0.10842991087129954	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCGCACA	20	7.0304226E-4	45.0	13
CGAGTTA	20	7.0304226E-4	45.0	21
CTCCGAT	20	7.0304226E-4	45.0	41
TCTCTAT	20	7.0304226E-4	45.0	36
CCCTATA	25	3.8884315E-5	45.0	40
GCAACCG	20	7.0304226E-4	45.0	1
CGTTGTA	20	7.0304226E-4	45.0	12
GACCCGT	20	7.0304226E-4	45.0	20
GCACCGT	25	3.8884315E-5	45.0	24
ATCGTGT	20	7.0304226E-4	45.0	20
CGCCTAG	20	7.0304226E-4	45.0	15
CCGTAGT	25	3.8884315E-5	45.0	27
CCCCGCA	35	1.2105556E-7	45.0	29
GCCCTAT	25	3.8884315E-5	45.0	39
AACGCCC	25	3.8884315E-5	45.0	27
AAATTCG	20	7.0304226E-4	45.0	30
AGCGATC	20	7.0304226E-4	45.0	19
CGAATGC	25	3.8884315E-5	45.0	26
TTAACGG	45	3.8380676E-10	45.0	2
GTATACT	25	3.8884315E-5	45.0	13