SRR3553674_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3553674_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	523137
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2870	0.5486134607187028	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1538	0.29399564550012713	No Hit
ATTCCTCCAGATCTCTACGCATTTCACCGCTACACCTGGAATTCTACCCCC	1068	0.20415302301309218	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1044	0.1995653146307755	No Hit
GCTGTCTCTTATACACATCTGACGCGTGGCAACTCGTATGCCGTCTTCTGC	898	0.1716567553050157	TruSeq Adapter, Index 18 (95% over 23bp)
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGTGGCAACTCGTATGCC	861	0.16458403821561082	No Hit
CCTGTCTCTTATACACATCTGACGCGTGGCAACTCGTATGCCGTCTTCTGC	664	0.12692659857742808	RNA PCR Primer, Index 34 (96% over 25bp)
GGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT	632	0.12080965406767252	No Hit
CTGTCTCTTATACACATCTGACGCGTGGCAACTCGTATGCCGTCTTCTGCT	632	0.12080965406767252	RNA PCR Primer, Index 34 (96% over 26bp)
TGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT	535	0.10226766602247596	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GTCGACG	25	3.8878803E-5	45.000004	1
CGGCCTA	25	3.8878803E-5	45.000004	44
CGGTCTA	25	3.8878803E-5	45.000004	31
TACCGTT	25	3.8878803E-5	45.000004	14
ACCGGGT	35	1.2102282E-7	45.0	4
GCGCGTA	20	7.0297596E-4	45.0	6
CGTTGTA	35	1.2102282E-7	45.0	20
TACGATT	35	1.2102282E-7	45.0	11
AACGCCC	20	7.0297596E-4	45.0	27
CGGGATA	40	6.8030204E-9	45.0	6
TTAACGG	40	6.8030204E-9	45.0	2
ATTGGTA	20	7.0297596E-4	45.0	4
ATACGTA	20	7.0297596E-4	45.0	41
AATAGCG	45	3.8380676E-10	45.0	1
CGCGTAT	20	7.0297596E-4	45.0	7
TTCGCCC	20	7.0297596E-4	45.0	36
TATCGTG	20	7.0297596E-4	45.0	1
ACGGTTT	20	7.0297596E-4	45.0	29
ACGCATT	130	0.0	43.26923	17
TACGCAT	130	0.0	43.26923	16