SRR3553665_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3553665_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	700016
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GCTGTCTCTTATACACATCTGACGCCTTTACCTTCGTATGCCGTCTTCTGC	3255	0.4649893716715046	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	3021	0.4315615643071016	No Hit
CCTGTCTCTTATACACATCTGACGCCTTTACCTTCGTATGCCGTCTTCTGC	2579	0.3684201503965624	No Hit
CTGTCTCTTATACACATCTGACGCCTTTACCTTCGTATGCCGTCTTCTGCT	2288	0.326849672007497	No Hit
TCTGTCTCTTATACACATCTGACGCCTTTACCTTCGTATGCCGTCTTCTGC	1558	0.22256634134076936	No Hit
ATTCCTCCAGATCTCTACGCATTTCACCGCTACACCTGGAATTCTACCCCC	1556	0.22228063358551803	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1504	0.21485223194898403	No Hit
ACTGTCTCTTATACACATCTGACGCCTTTACCTTCGTATGCCGTCTTCTGC	1112	0.15885351191972755	No Hit
AAAACTGTCTCTTATACACATCTGACGCCTTTACCTTCGTATGCCGTCTTC	1058	0.15113940252794222	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCCTTTACCTTCGTATGCC	1053	0.15042513313981395	No Hit
ACTCTAGGGGGTTTTATTTTTCATGACTGTTGAGTTCTCTTTATCACAAAC	1016	0.14513953966766474	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	914	0.130568444149848	No Hit
TGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT	718	0.10256908413521977	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCACGCT	20	7.0313935E-4	45.000004	34
CTCGTCA	60	0.0	45.000004	36
GAATCGT	20	7.0313935E-4	45.000004	10
CCGTAGT	60	0.0	45.000004	27
GTTCGCG	20	7.0313935E-4	45.000004	2
ACGTGAC	20	7.0313935E-4	45.000004	25
ATAACGC	40	6.8084773E-9	45.000004	11
GCTAACC	20	7.0313935E-4	45.000004	29
ATCGCGT	20	7.0313935E-4	45.000004	32
TCGCGAC	20	7.0313935E-4	45.000004	17
GTTATCG	20	7.0313935E-4	45.000004	42
CTTACGT	20	7.0313935E-4	45.000004	22
CAGCGGA	25	3.889238E-5	45.0	37
GTACCAT	35	1.2110104E-7	45.0	9
ATATGCG	25	3.889238E-5	45.0	1
CGTTCGG	35	1.2110104E-7	45.0	2
CCTCGCA	25	3.889238E-5	45.0	22
ACGATAG	25	3.889238E-5	45.0	1
TCGCTAG	70	0.0	45.0	1
CATTTCG	35	1.2110104E-7	45.0	39