SRR3553660_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3553660_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	587866
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	3123	0.5312435146785152	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1424	0.24223207329561497	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1341	0.22811320947290709	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGCGTCTAATCGTATGCC	1078	0.18337512290215796	No Hit
GCTGTCTCTTATACACATCTGACGCGCGTCTAATCGTATGCCGTCTTCTGC	970	0.16500358925333325	No Hit
ATTCCTCCAGATCTCTACGCATTTCACCGCTACACCTGGAATTCTACCCCC	869	0.14782280315582122	No Hit
CTGTCTCTTATACACATCTGACGCGCGTCTAATCGTATGCCGTCTTCTGCT	811	0.13795660915923016	No Hit
CCTGTCTCTTATACACATCTGACGCGCGTCTAATCGTATGCCGTCTTCTGC	761	0.1294512695069965	No Hit
TATGAAAACTATGCCCTCGTGTACTCCTGCACCACCTTCTTCTGGCTCTTC	756	0.12860073554177312	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ATTGCGG	85	0.0	45.000004	2
TCTATAC	30	2.1636843E-6	45.000004	10
TCGCCAA	20	7.030471E-4	45.0	27
TCGTTCA	50	2.1827873E-11	45.0	16
TACCCGA	20	7.030471E-4	45.0	28
GTATTCG	20	7.030471E-4	45.0	38
TTTACGT	25	3.8884733E-5	45.0	27
ACGCATT	135	0.0	45.0	17
CGTGAGT	20	7.030471E-4	45.0	32
TAAACGG	55	1.8189894E-12	45.0	2
CGTCTTG	20	7.030471E-4	45.0	18
CGTTCAT	50	2.1827873E-11	45.0	17
GCACCGT	20	7.030471E-4	45.0	24
ATCGTGA	20	7.030471E-4	45.0	30
TACGCAT	135	0.0	45.0	16
CGTAGTG	20	7.030471E-4	45.0	28
CGCTATA	20	7.030471E-4	45.0	34
GATATCG	20	7.030471E-4	45.0	12
TTGCGAA	25	3.8884733E-5	45.0	14
TCCGTTA	20	7.030471E-4	45.0	23