SRR3553653_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3553653_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	458138
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1290	0.28157454740711313	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	989	0.21587381967878677	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	977	0.21325452156337174	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	752	0.16414268189934036	No Hit
ATTCCTCCAGATCTCTACGCATTTCACCGCTACACCTGGAATTCTACCCCC	517	0.11284809380579651	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GTACACT	65	0.0	45.000004	18
ACGTTAG	30	2.1626329E-6	45.000004	1
ACGCTAG	30	2.1626329E-6	45.000004	1
AGGTATG	20	7.0288405E-4	45.0	1
CGGCGAA	20	7.0288405E-4	45.0	31
CGAACCC	20	7.0288405E-4	45.0	34
ACGTTAT	20	7.0288405E-4	45.0	10
GCGAACC	20	7.0288405E-4	45.0	33
GTTTACG	20	7.0288405E-4	45.0	1
CGTTGTA	25	3.88712E-5	45.0	10
CTATACG	20	7.0288405E-4	45.0	1
GGCCGTA	40	6.7993824E-9	45.0	42
TCCTCGA	20	7.0288405E-4	45.0	21
TTACTAA	20	7.0288405E-4	45.0	41
CGATTCG	25	3.88712E-5	45.0	10
TTATCGG	40	6.7993824E-9	45.0	2
ACGGGTC	25	3.88712E-5	45.0	5
CGTTATA	20	7.0288405E-4	45.0	11
CCCGTTT	25	3.88712E-5	45.0	45
ATTCCCG	25	3.88712E-5	45.0	42