SRR3553652_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3553652_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	580807
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1949	0.3355675809692376	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1139	0.19610645188504958	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1137	0.19576210341817504	No Hit
GAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAA	973	0.1675255291344629	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	929	0.15994986286322307	No Hit
ATTCCTCCAGATCTCTACGCATTTCACCGCTACACCTGGAATTCTACCCCC	772	0.1329185082135718	No Hit
GTGGGGAGGGAGTGTTCTGCTGGTCTCCAATTACCAAGAATTCTCCAAAAA	605	0.10416541122954787	No Hit
GCTGTCTCTTATACACATCTGACGCAGATCGACTCGTATGCCGTCTTCTGC	587	0.101066275027677	TruSeq Adapter, Index 21 (95% over 21bp)
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCAGATCGACTCGTATGCC	583	0.10037757809392793	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CACGGTA	20	7.0304004E-4	45.000004	39
CGACGGT	20	7.0304004E-4	45.000004	28
ATCGTAG	20	7.0304004E-4	45.000004	1
ACGATTG	20	7.0304004E-4	45.000004	13
CCCGTTG	20	7.0304004E-4	45.000004	9
AAGCACG	20	7.0304004E-4	45.000004	25
TATTCGA	20	7.0304004E-4	45.000004	27
CGAATCA	20	7.0304004E-4	45.000004	43
ATGGTCG	20	7.0304004E-4	45.000004	44
TAGGCAC	20	7.0304004E-4	45.000004	10
TTCGATC	20	7.0304004E-4	45.000004	19
GCACTAG	40	6.8048394E-9	45.000004	1
TGCACGA	20	7.0304004E-4	45.000004	39
ACGAATC	20	7.0304004E-4	45.000004	42
GCGAATG	35	1.2105374E-7	45.0	1
GACGTCT	25	3.8884144E-5	45.0	20
CCAATGT	25	3.8884144E-5	45.0	15
CGTTCCA	25	3.8884144E-5	45.0	28
TATTGCG	25	3.8884144E-5	45.0	1
ACGATAG	25	3.8884144E-5	45.0	1