SRR3553648_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3553648_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1481628
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2874	0.1939758157918182	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2265	0.15287238092152686	No Hit
GCTGTCTCTTATACACATCTGACGCTCCTGACTTCGTATGCCGTCTTCTGC	1816	0.12256787803686216	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTATGCG	60	0.0	45.000004	1
CGAAACG	20	7.0339476E-4	45.0	40
TAGGTCG	40	6.8175723E-9	45.0	1
ACTCGAC	20	7.0339476E-4	45.0	10
TCGACGT	25	3.891354E-5	45.0	26
TATCGTG	20	7.0339476E-4	45.0	1
ACGAAGT	20	7.0339476E-4	45.0	35
CGGTCTA	75	0.0	42.000004	31
TCGTAAG	60	3.6379788E-12	41.250004	1
TATACGG	50	1.0822987E-9	40.5	2
ACGTAAC	45	1.9290383E-8	40.0	15
CTTACGG	90	0.0	40.0	2
CGTAAGG	270	0.0	39.166664	2
CGTTAGG	195	0.0	38.076923	2
TTAGGGA	775	0.0	37.741936	4
ACGTTAT	30	1.14008115E-4	37.500004	39
CGACTCG	30	1.14008115E-4	37.500004	17
GCTTACG	90	0.0	37.5	1
TACGCGG	170	0.0	37.058823	2
GTCAACG	55	2.750312E-9	36.818184	1