SRR3553644_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3553644_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	850401
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
TATGAAAACTATGCCCTCGTGTACTCCTGCACCACCTTCTTCTGGCTCTTC	2096	0.24647195852309675	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1786	0.21001856771099753	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1718	0.20202234004898867	No Hit
GGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT	982	0.11547493476606917	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	950	0.11171200410159442	No Hit
GCTAAAGGTGTAATTTGAAATGGCCTTCGGGTAAATGCAAGATACTTAACT	932	0.10959535560282738	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTCGTAG	30	2.164832E-6	45.000004	1
GTCGACG	35	1.2114288E-7	45.000004	1
TATAGCG	30	2.164832E-6	45.000004	1
CGTCCTA	20	7.032249E-4	45.000004	13
CGTTTCA	20	7.032249E-4	45.000004	44
TAGGTCG	25	3.8899474E-5	45.0	5
AATGCGC	25	3.8899474E-5	45.0	26
CGAATAT	90	0.0	45.0	14
TCGACGT	55	1.8189894E-12	45.0	26
TAGTCAA	25	3.8899474E-5	45.0	24
TAGTACG	50	2.1827873E-11	45.0	1
GTACGAG	55	1.8189894E-12	45.0	1
TGCGTAG	70	0.0	41.785717	1
TTTCGAC	60	3.6379788E-12	41.250004	24
TACGCAT	55	6.002665E-11	40.909092	16
CTACGAA	100	0.0	40.5	11
CTTACGG	50	1.0804797E-9	40.5	2
TCGTTCA	120	0.0	39.375004	16
GTATACG	40	3.4568075E-7	39.375004	1
TCGTGTA	340	0.0	39.04412	17