SRR3553642_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3553642_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	509240
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	3043	0.5975571439792632	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCGCGAATCATCGTATGCCG	1861	0.36544654779671665	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1680	0.329903385437122	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1568	0.3079098264079805	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCGCGAATCATCGTATGC	1299	0.25508601052548896	No Hit
GAATCTGTCTCTTATACACATCTGACGCGCGAATCATCGTATGCCGTCTTC	1288	0.2529259288351268	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGCGAATCATCGTATGCC	1116	0.2191501060403739	No Hit
ATTCCTCCAGATCTCTACGCATTTCACCGCTACACCTGGAATTCTACCCCC	860	0.16887911397376484	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	793	0.155722252768832	No Hit
GAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAA	700	0.13745974393213417	No Hit
GCTGTCTCTTATACACATCTGACGCGCGAATCATCGTATGCCGTCTTCTGC	626	0.12292828528787998	No Hit
CCTGTCTCTTATACACATCTGACGCGCGAATCATCGTATGCCGTCTTCTGC	606	0.11900086403267615	No Hit
GTGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	520	0.10211295263529965	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGATGTA	45	3.8380676E-10	45.000004	10
TTGATCG	20	7.0295826E-4	45.0	24
TCGCAAT	20	7.0295826E-4	45.0	41
GATCGTA	20	7.0295826E-4	45.0	10
CAACGAC	25	3.887734E-5	45.0	16
GTCCTCG	20	7.0295826E-4	45.0	38
GACGTAG	20	7.0295826E-4	45.0	1
GTTACCG	20	7.0295826E-4	45.0	43
TACGCGG	35	1.2101373E-7	45.0	2
GTTAACG	20	7.0295826E-4	45.0	1
CATAGCG	20	7.0295826E-4	45.0	1
CTACGCA	105	0.0	45.0	15
CGAGGTT	25	3.887734E-5	45.0	14
CGCTAGG	20	7.0295826E-4	45.0	2
GTCAATT	35	1.2101373E-7	45.0	15
GTACTAG	35	1.2101373E-7	45.0	1
TCGTACT	25	3.887734E-5	45.0	12
TACTCGC	20	7.0295826E-4	45.0	45
TCATCGG	20	7.0295826E-4	45.0	2
ATGCGTT	20	7.0295826E-4	45.0	12