SRR3553638_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3553638_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	615002
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2266	0.36845408632817456	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1393	0.22650332844446033	No Hit
CCTGTCTCTTATACACATCTGACGCAGCTCTGTTCGTATGCCGTCTTCTGC	1143	0.1858530541364093	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1095	0.17804820146926353	No Hit
GCTGTCTCTTATACACATCTGACGCAGCTCTGTTCGTATGCCGTCTTCTGC	1076	0.17495878062185163	No Hit
GGTCTTTGGGGATGAAGGCGGGTGGATCTCTAAGTTGGGTTCAAGACTTGC	849	0.1380483315501413	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCAGCTCTGTTCGTATGCC	832	0.13528411289719383	No Hit
ATTCCTCCAGATCTCTACGCATTTCACCGCTACACCTGGAATTCTACCCCC	783	0.12731665913281584	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	727	0.11821099768781239	No Hit
GTTAGGCCTTTGCTTCAAAACGAGAAGTAATATCAGTATCGTATGCTTCAA	689	0.11203215599298864	No Hit
CTGTCTCTTATACACATCTGACGCAGCTCTGTTCGTATGCCGTCTTCTGCT	642	0.10438990442307504	Illumina Single End Adapter 1 (95% over 21bp)
GGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT	631	0.10260129235352079	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GTATTCG	25	3.888682E-5	45.000004	9
CGCATGG	30	2.1638498E-6	45.000004	2
TTATGCA	25	3.888682E-5	45.000004	44
GCACGGT	25	3.888682E-5	45.000004	21
CCCGTCA	50	2.1827873E-11	45.000004	12
ATGACGG	50	2.1827873E-11	45.000004	2
GCGATAC	30	2.1638498E-6	45.000004	9
CAGTACG	30	2.1638498E-6	45.000004	1
CGATCAT	25	3.888682E-5	45.000004	10
TATAACG	30	2.1638498E-6	45.000004	1
CGATACA	25	3.888682E-5	45.000004	10
ACGGTCG	25	3.888682E-5	45.000004	23
GCGAATG	45	3.8380676E-10	45.0	1
CGTGCCG	20	7.030726E-4	45.0	25
ATTACGA	20	7.030726E-4	45.0	23
GACCGAA	20	7.030726E-4	45.0	9
GTTAACG	35	1.2107012E-7	45.0	1
CCCCCGT	55	1.8189894E-12	45.0	10
TTACGAA	20	7.030726E-4	45.0	24
CCGGTCA	20	7.030726E-4	45.0	35