SRR3553636_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3553636_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	893820
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	3277	0.36662862768790133	No Hit
CCTGTCTCTTATACACATCTGACGCTCGTTCTCTCGTATGCCGTCTTCTGC	3058	0.3421270501890761	Illumina PCR Primer Index 10 (95% over 23bp)
GCTGTCTCTTATACACATCTGACGCTCGTTCTCTCGTATGCCGTCTTCTGC	2128	0.23807925533105098	Illumina PCR Primer Index 10 (95% over 23bp)
CTGTCTCTTATACACATCTGACGCTCGTTCTCTCGTATGCCGTCTTCTGCT	2110	0.23606542704347633	Illumina PCR Primer Index 10 (95% over 24bp)
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2033	0.22745071714662907	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1473	0.1647982815331946	No Hit
TCTGTCTCTTATACACATCTGACGCTCGTTCTCTCGTATGCCGTCTTCTGC	1267	0.14175113557539548	Illumina PCR Primer Index 10 (95% over 23bp)
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCTCGTTCTCTCGTATGCC	1171	0.13101071804166387	No Hit
GGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT	1101	0.12317916358998457	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	1035	0.11579512653554407	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCGTTAA	35	1.2115197E-7	45.000004	33
TGTCACG	25	3.890108E-5	45.0	1
ACACGTA	20	7.0324435E-4	45.0	43
ACGCATG	25	3.890108E-5	45.0	1
CGTAATA	20	7.0324435E-4	45.0	28
ACGTAAG	45	3.8380676E-10	45.0	1
CCGTTAG	25	3.890108E-5	45.0	1
TACACGA	40	6.8121153E-9	45.0	9
TACGTAG	25	3.890108E-5	45.0	1
ATAACGC	110	0.0	42.954544	11
TCGTTTA	100	0.0	42.75	38
AATGCGG	125	0.0	41.399998	2
GCATCGC	115	0.0	41.08696	22
CACAACG	55	6.002665E-11	40.909092	12
TACGCAT	105	0.0	40.714287	16
CGTAAGG	145	0.0	40.344826	2
TCGTTGC	45	1.9274012E-8	40.0	16
TTACACG	295	0.0	38.898304	34
TCGGCAT	110	0.0	38.863636	32
CATCGTT	110	0.0	38.863636	36