SRR3553633_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3553633_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	842777
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACCTGTCTCTTATACACATCTGACGCACAGTCAGTCGTATGCCG	3686	0.43736362050696687	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2769	0.32855666445572196	No Hit
GAATCTGTCTCTTATACACATCTGACGCACAGTCAGTCGTATGCCGTCTTC	2525	0.29960475902878225	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2265	0.26875436800007596	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCACAGTCAGTCGTATGC	2205	0.2616350469934514	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCACAGTCAGTCGTATGCC	1401	0.16623614550468271	No Hit
GCTGTCTCTTATACACATCTGACGCACAGTCAGTCGTATGCCGTCTTCTGC	1284	0.1523534695417649	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1106	0.13123281722211214	No Hit
GTCTTCGGGGTTAGGGTTAGGGTTAGGGTTAGGGTTAGGGTTAGGGTTAGG	937	0.11118006305345304	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AATTACG	20	7.032214E-4	45.0	1
CGGTCTA	20	7.032214E-4	45.0	31
ACGTAAT	20	7.032214E-4	45.0	11
ATCCGAT	30	2.1648102E-6	44.999996	30
ATGCGTT	30	2.1648102E-6	44.999996	27
GTCGAAT	120	0.0	41.249996	43
CGTCGAA	60	3.6379788E-12	41.249996	42
CGATGAA	700	0.0	41.142857	19
CGTAAGG	55	6.002665E-11	40.909092	2
GACACGA	185	0.0	40.135136	25
TCGTTAG	45	1.9272193E-8	40.0	1
CACGACC	180	0.0	40.0	27
AATACGG	90	0.0	40.0	2
TTATCGC	40	3.456753E-7	39.375	31
TACGCAT	40	3.456753E-7	39.375	16
ATGGTCG	40	3.456753E-7	39.375	44
TGCGTTG	40	3.456753E-7	39.375	1
AACACGT	180	0.0	38.75	41
GCGAATG	35	6.246304E-6	38.57143	1
TGAAGCG	35	6.246304E-6	38.57143	1