SRR3553630_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3553630_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	806117
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACCTGTCTCTTATACACATCTGACGCAGGTAGACTCGTATGCCG	2693	0.3340706125785711	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2066	0.25629033998786777	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCAGGTAGACTCGTATGC	1667	0.20679380288469293	No Hit
GAATCTGTCTCTTATACACATCTGACGCAGGTAGACTCGTATGCCGTCTTC	1563	0.19389244985529397	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1535	0.19041900865507116	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCAGGTAGACTCGTATGCC	927	0.11499571402166188	No Hit
GCTGTCTCTTATACACATCTGACGCAGGTAGACTCGTATGCCGTCTTCTGC	889	0.11028175810707379	TruSeq Adapter, Index 15 (95% over 22bp)
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	808	0.10023358892071497	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CAACGAA	25	3.889766E-5	45.0	9
GTTAGCG	25	3.889766E-5	45.0	1
GCCGATT	50	2.1827873E-11	45.0	9
CGCTCAC	25	3.889766E-5	45.0	34
TGCGATT	20	7.032032E-4	45.0	32
TTACGAG	40	6.8102963E-9	45.0	1
TATTGCG	30	2.164692E-6	44.999996	1
TCTACGG	65	0.0	44.999996	2
TTACGCG	30	2.164692E-6	44.999996	1
CTCGAAT	160	0.0	42.1875	43
CGCTAGG	65	0.0	41.53846	2
TCCCGAT	65	0.0	41.53846	39
GGCCGAT	120	0.0	41.249996	8
GTATCCG	60	3.6379788E-12	41.249996	29
GCGTATG	60	3.6379788E-12	41.249996	1
CGGACTG	60	3.6379788E-12	41.249996	40
ACGTAAG	50	1.0804797E-9	40.5	1
GCGTACG	50	1.0804797E-9	40.5	1
TGCGAAG	45	1.9270374E-8	40.0	1
TAGCGAG	80	0.0	39.375	1