SRR3553628_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3553628_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	611913
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACCTGTCTCTTATACACATCTGACGCCCGTGTATTCGTATGCCG	14521	2.3730497636101866	No Hit
GAATCTGTCTCTTATACACATCTGACGCCCGTGTATTCGTATGCCGTCTTC	8203	1.340550045513006	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCCCGTGTATTCGTATGC	6297	1.0290678576856513	No Hit
GCTGTCTCTTATACACATCTGACGCCCGTGTATTCGTATGCCGTCTTCTGC	2712	0.44320025886032816	No Hit
GAATGACTGTCTCTTATACACATCTGACGCCCGTGTATTCGTATGCCGTCT	2617	0.42767517604626804	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2228	0.3641040474708006	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCCCGTGTATT	2226	0.36377720362208354	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1881	0.3073966397183913	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCCCGTGTATTCGTATGCCGTC	1749	0.2858249457030656	No Hit
GAACTGTCTCTTATACACATCTGACGCCCGTGTATTCGTATGCCGTCTTCT	1545	0.2524868731339259	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCCCGTGTATTCGTA	1534	0.2506892319659821	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1283	0.20967032895199156	No Hit
CCTGTCTCTTATACACATCTGACGCCCGTGTATTCGTATGCCGTCTTCTGC	1237	0.20215292043149927	No Hit
ATTCCTCCAGATCTCTACGCATTTCACCGCTACACCTGGAATTCTACCCCC	1165	0.19038654187768522	No Hit
CTGTCTCTTATACACATCTGACGCCCGTGTATTCGTATGCCGTCTTCTGCT	1077	0.17600541253413476	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCCCGTGTATTCGTATGCC	892	0.14577235652780707	No Hit
TCTGTCTCTTATACACATCTGACGCCCGTGTATTCGTATGCCGTCTTCTGC	677	0.11063664279072352	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TTGTGCG	60	0.0	45.000004	1
CGAATTC	30	2.1638316E-6	45.000004	44
CCGAACT	30	2.1638316E-6	45.000004	11
TCGCGAC	30	2.1638316E-6	45.000004	1
CTTACCG	30	2.1638316E-6	45.000004	25
CGTATTA	20	7.0306985E-4	45.0	17
TTTACGT	20	7.0306985E-4	45.0	36
ACGTTTA	20	7.0306985E-4	45.0	39
CGCTCGA	20	7.0306985E-4	45.0	42
AACGCTC	20	7.0306985E-4	45.0	22
CTCGAAT	35	1.210683E-7	45.0	43
AACTCGT	20	7.0306985E-4	45.0	39
CGCCGTG	20	7.0306985E-4	45.0	45
GCGTCTA	20	7.0306985E-4	45.0	34
CGTTTAG	20	7.0306985E-4	45.0	40
CGTCAAT	40	6.8066583E-9	45.0	14
TGAGACG	20	7.0306985E-4	45.0	13
AACACGC	35	1.210683E-7	45.0	28
AACGTCG	25	3.888661E-5	44.999996	17
ACTTAGA	25	3.888661E-5	44.999996	20