SRR3553622_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3553622_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1316053
Sequences flagged as poor quality	0
Sequence length	51
%GC	50

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACCTGTCTCTTATACACATCTGACGCTCTAGGGATCGTATGCCG	6102	0.4636591383477717	No Hit
GAATCTGTCTCTTATACACATCTGACGCTCTAGGGATCGTATGCCGTCTTC	5485	0.41677652799697273	No Hit
TATGAAAACTATGCCCTCGTGTACTCCTGCACCACCTTCTTCTGGCTCTTC	4211	0.3199719160246586	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCTCTAGGGATCGTATGC	3614	0.2746090013092178	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3530	0.26822627964071355	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2061	0.15660463522365742	No Hit
GGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT	1618	0.12294337690047438	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCTCTAGGGATCGTATGCC	1496	0.11367323352478965	No Hit
GCTGTCTCTTATACACATCTGACGCTCTAGGGATCGTATGCCGTCTTCTGC	1440	0.10941808574578683	No Hit
GAATGACTGTCTCTTATACACATCTGACGCTCTAGGGATCGTATGCCGTCT	1436	0.1091141466187152	No Hit
TGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT	1356	0.1030353640772826	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACGTATA	30	2.1657434E-6	45.000004	13
CGTAAGC	25	3.891116E-5	45.0	43
TTACGAG	20	7.03366E-4	45.0	1
TTCGATC	25	3.891116E-5	45.0	21
TATCGAT	45	3.8562575E-10	45.0	13
CGATCGA	125	0.0	44.999996	41
CCGATCG	135	0.0	43.333336	40
CCCTCGT	590	0.0	41.5678	14
ACTATGC	610	0.0	40.573772	8
GCGAACC	50	1.0822987E-9	40.5	33
TACGAAT	140	0.0	40.17857	12
CGAATAT	140	0.0	40.17857	14
AGTTTCG	45	1.9286745E-8	40.0	1
CGTACAT	45	1.9286745E-8	40.0	35
ACGTAAG	40	3.4587356E-7	39.375	1
ACGTAGG	190	0.0	39.07895	2
CGTGTAC	625	0.0	38.88	18
CCGATGA	830	0.0	38.493973	18
CGTAAGG	195	0.0	38.076923	2
ACGCATT	125	0.0	37.8	17