SRR3553620_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3553620_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	373626
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2492	0.6669771375653728	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCAGCTAGGATCGTATGCCG	1428	0.38220038220038216	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1379	0.36908566320331027	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1218	0.3259944436415025	No Hit
GAATCTGTCTCTTATACACATCTGACGCAGCTAGGATCGTATGCCGTCTTC	958	0.2564061387590799	No Hit
GCTGTCTCTTATACACATCTGACGCAGCTAGGATCGTATGCCGTCTTCTGC	873	0.2336561160090572	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCAGCTAGGATCGTATGCC	859	0.2299090534384652	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCAGCTAGGATCGTATGC	838	0.22428845958257726	No Hit
ATTCCTCCAGATCTCTACGCATTTCACCGCTACACCTGGAATTCTACCCCC	816	0.21840021840021842	No Hit
CCTGTCTCTTATACACATCTGACGCAGCTAGGATCGTATGCCGTCTTCTGC	616	0.1648707531060472	No Hit
GAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAA	615	0.16460310577957638	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	478	0.1279354220530691	No Hit
CTGTCTCTTATACACATCTGACGCAGCTAGGATCGTATGCCGTCTTCTGCT	472	0.12632953809424396	Illumina Single End Adapter 1 (95% over 21bp)
GTGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	446	0.11937070760600173	No Hit
GTGAATGGGGGTTCAGTTTCATCAACGCTCGATGGACCAGGAATCTGATGA	419	0.11214422979128863	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TACGCAT	90	0.0	45.000004	16
GACAGTC	20	7.027167E-4	45.0	38
AACGTAC	20	7.027167E-4	45.0	21
AACGTAA	20	7.027167E-4	45.0	23
CGGAACA	20	7.027167E-4	45.0	19
ACGCCTA	25	3.885735E-5	45.0	17
GTCGATG	35	1.2089913E-7	45.0	1
GTACATC	20	7.027167E-4	45.0	36
TAGCGCG	25	3.885735E-5	45.0	1
ACTCTAC	25	3.885735E-5	45.0	45
TTGTCGG	20	7.027167E-4	45.0	2
CGACCGA	20	7.027167E-4	45.0	11
AAGGTTC	25	3.885735E-5	45.0	5
ATAGACG	20	7.027167E-4	45.0	1
TGTGCGT	20	7.027167E-4	45.0	39
TCGATAG	20	7.027167E-4	45.0	1
CCGTCGA	20	7.027167E-4	45.0	20
CCGTCAA	25	3.885735E-5	45.0	13
AGTATCG	20	7.027167E-4	45.0	1
CGTTAGG	35	1.2089913E-7	45.0	2