SRR3553617_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3553617_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	291224
Sequences flagged as poor quality	0
Sequence length	51
%GC	44

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1994	0.6846963162376727	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1345	0.4618438040820812	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1060	0.3639809905776996	No Hit
ATTCCTCCAGATCTCTACGCATTTCACCGCTACACCTGGAATTCTACCCCC	871	0.2990824932011098	No Hit
GCTGTCTCTTATACACATCTGACGCCAAGCTGATCGTATGCCGTCTTCTGC	819	0.28122682196522264	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCCAAGCTGATCGTATGCCG	784	0.2692085817102986	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCCAAGCTGATCGTATGCC	635	0.21804521605362195	No Hit
GAATCTGTCTCTTATACACATCTGACGCCAAGCTGATCGTATGCCGTCTTC	524	0.17993022553086285	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCCAAGCTGATCGTATGC	517	0.17752657747987802	No Hit
CCTGTCTCTTATACACATCTGACGCCAAGCTGATCGTATGCCGTCTTCTGC	431	0.14799604428206467	No Hit
CTGTCTCTTATACACATCTGACGCCAAGCTGATCGTATGCCGTCTTCTGCT	340	0.11674861961926215	Illumina Single End Adapter 1 (95% over 21bp)
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	330	0.11331483668928384	No Hit
GAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAA	312	0.10713402741532291	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TTTAGCG	20	7.0246053E-4	45.0	1
CAGCGAA	25	3.8836104E-5	45.0	2
TCGTTGC	25	3.8836104E-5	45.0	16
CGAACTC	25	3.8836104E-5	45.0	25
CTCGTTG	25	3.8836104E-5	45.0	15
TCCGCAA	20	7.0246053E-4	45.0	32
CTCAAGG	35	1.2077544E-7	45.0	2
GATCGAG	20	7.0246053E-4	45.0	1
CGTGCGG	25	3.8836104E-5	45.0	2
TAGACAG	20	7.0246053E-4	45.0	1
TTTCGAG	20	7.0246053E-4	45.0	1
CGTGACG	20	7.0246053E-4	45.0	2
GGCAATC	25	3.8836104E-5	45.0	9
GGCGTCA	25	3.8836104E-5	45.0	36
CGTTGCG	25	3.8836104E-5	45.0	17
ATAGCCG	20	7.0246053E-4	45.0	1
ATTAACG	20	7.0246053E-4	45.0	1
TAACGTG	20	7.0246053E-4	45.0	40
CGACACA	20	7.0246053E-4	45.0	39
GCGTTAG	35	1.2077544E-7	45.0	1