SRR3553612_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3553612_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	522871
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	3917	0.7491331513891573	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1968	0.37638346743269374	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1808	0.3457831855275967	No Hit
GCTGTCTCTTATACACATCTGACGCGCACACTATCGTATGCCGTCTTCTGC	1304	0.24939229752654096	TruSeq Adapter, Index 13 (95% over 22bp)
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGCACACTATCGTATGCC	1188	0.22720709314534562	No Hit
ATTCCTCCAGATCTCTACGCATTTCACCGCTACACCTGGAATTCTACCCCC	1071	0.20483063700224338	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCGCACACTATCGTATGCCG	990	0.189339244287788	No Hit
GAATCTGTCTCTTATACACATCTGACGCGCACACTATCGTATGCCGTCTTC	764	0.14611634609683843	No Hit
CTGTCTCTTATACACATCTGACGCGCACACTATCGTATGCCGTCTTCTGCT	763	0.14592509433493156	Illumina PCR Primer Index 1 (95% over 21bp)
CCTGTCTCTTATACACATCTGACGCGCACACTATCGTATGCCGTCTTCTGC	632	0.12087111352513334	TruSeq Adapter, Index 13 (95% over 22bp)
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	628	0.12010610647750593	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCGCACACTATCGTATGC	585	0.1118822807155111	No Hit
GAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAA	536	0.10251094438207511	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTAGACT	20	7.029754E-4	45.000004	33
TTTACGT	20	7.029754E-4	45.000004	34
CGAAAGG	65	0.0	45.000004	2
CAACGAT	20	7.029754E-4	45.000004	31
CGCATCG	30	2.1632222E-6	45.000004	21
GCCGCAT	30	2.1632222E-6	45.000004	19
CCCTTTA	20	7.029754E-4	45.000004	35
CGTACTT	20	7.029754E-4	45.000004	38
TTACGTA	20	7.029754E-4	45.000004	35
CATCGAA	20	7.029754E-4	45.000004	42
GCGTGTC	20	7.029754E-4	45.000004	9
CACGTCG	20	7.029754E-4	45.000004	2
CCAGTCG	30	2.1632222E-6	45.000004	28
GAATGCG	35	1.2102282E-7	45.0	1
TTCGTAG	35	1.2102282E-7	45.0	1
CGATTCG	25	3.887879E-5	45.0	10
GAATAAC	35	1.2102282E-7	45.0	9
ATCACGC	35	1.2102282E-7	45.0	42
TATTACG	25	3.887879E-5	45.0	1
CCGACGT	25	3.887879E-5	45.0	24