SRR3553610_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3553610_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	261383
Sequences flagged as poor quality	0
Sequence length	51
%GC	50

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACCTGTCTCTTATACACATCTGACGCTGTCAAAGTCGTATGCCG	854	0.32672362012831746	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	714	0.27316237092695395	No Hit
GAATCTGTCTCTTATACACATCTGACGCTGTCAAAGTCGTATGCCGTCTTC	672	0.2570939961665449	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	656	0.25097271054353193	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCTGTCAAAGTCGTATGC	468	0.17904760447312948	No Hit
TATGAAAACTATGCCCTCGTGTACTCCTGCACCACCTTCTTCTGGCTCTTC	419	0.16030116725265225	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	331	0.12663409632608089	No Hit
GGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT	275	0.10520959664553549	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CATGCGG	40	6.7811925E-9	45.000004	2
GTGGAAC	20	7.0232735E-4	45.000004	35
CGTAGCC	20	7.0232735E-4	45.000004	39
GGTATGC	20	7.0232735E-4	45.000004	8
TCGTTCA	25	3.8825106E-5	45.0	16
ACGGGTA	35	1.2071177E-7	45.0	5
CGTTAGG	25	3.8825106E-5	45.0	2
CGAATGC	50	2.1827873E-11	45.0	45
AGTTCGC	25	3.8825106E-5	45.0	37
CGTCGAC	25	3.8825106E-5	45.0	43
CTAGGGA	100	0.0	45.0	4
CGTATGG	30	2.1590458E-6	44.999996	2
GATGAAT	325	0.0	43.615387	20
CGATGAA	330	0.0	42.272728	19
TGAATGA	325	0.0	41.538464	22
ATAGCGG	60	3.6379788E-12	41.249996	2
TCAAGCG	60	3.6379788E-12	41.249996	17
GTTGATC	110	0.0	40.909092	16
TACACGC	90	0.0	40.000004	35
ATGAATG	350	0.0	39.857143	21