##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3553610_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 261383 Sequences flagged as poor quality 0 Sequence length 51 %GC 50 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.950635657253915 33.0 31.0 34.0 30.0 34.0 2 32.055466499351525 33.0 31.0 34.0 30.0 34.0 3 32.02743483700164 33.0 31.0 34.0 30.0 34.0 4 35.703488750224764 37.0 35.0 37.0 33.0 37.0 5 35.57929934234438 37.0 35.0 37.0 33.0 37.0 6 35.549546068413015 37.0 35.0 37.0 33.0 37.0 7 35.770681337347874 37.0 35.0 37.0 35.0 37.0 8 35.64907052103618 37.0 35.0 37.0 35.0 37.0 9 37.34271547881844 39.0 37.0 39.0 34.0 39.0 10 36.88616704223305 39.0 37.0 39.0 32.0 39.0 11 36.8085376631227 39.0 37.0 39.0 32.0 39.0 12 36.71811479706025 39.0 35.0 39.0 32.0 39.0 13 36.688300310272666 39.0 35.0 39.0 32.0 39.0 14 37.79650551106996 40.0 37.0 41.0 33.0 41.0 15 37.92172788589924 40.0 37.0 41.0 33.0 41.0 16 37.96325315724435 40.0 37.0 41.0 33.0 41.0 17 37.855231595015745 40.0 36.0 41.0 33.0 41.0 18 37.85983403664355 40.0 36.0 41.0 33.0 41.0 19 37.76804153292295 40.0 36.0 41.0 33.0 41.0 20 37.57765424683319 40.0 36.0 41.0 32.0 41.0 21 37.483987099390546 39.0 35.0 41.0 32.0 41.0 22 37.45073321524353 39.0 35.0 41.0 32.0 41.0 23 37.29500388319057 39.0 35.0 41.0 32.0 41.0 24 37.287126553754455 39.0 35.0 41.0 32.0 41.0 25 37.197162784113736 39.0 35.0 41.0 32.0 41.0 26 37.10054976796501 39.0 35.0 41.0 32.0 41.0 27 37.00647708534985 39.0 35.0 41.0 31.0 41.0 28 36.88393659878416 39.0 35.0 41.0 31.0 41.0 29 36.849997895808066 39.0 35.0 41.0 31.0 41.0 30 36.69187743655861 39.0 35.0 41.0 31.0 41.0 31 36.62727491841474 39.0 35.0 41.0 30.0 41.0 32 36.361056380866394 39.0 35.0 41.0 30.0 41.0 33 36.232210970108994 39.0 35.0 41.0 30.0 41.0 34 36.03656702999047 39.0 35.0 41.0 29.0 41.0 35 35.912603344517436 39.0 35.0 41.0 28.0 41.0 36 35.746858058863815 38.0 35.0 40.0 27.0 41.0 37 35.655532303171974 38.0 35.0 40.0 27.0 41.0 38 35.517424622106255 38.0 35.0 40.0 27.0 41.0 39 35.39860281655655 38.0 34.0 40.0 26.0 41.0 40 35.243393793781536 38.0 34.0 40.0 26.0 41.0 41 35.13203613088839 38.0 34.0 40.0 25.0 41.0 42 34.95717012965648 38.0 34.0 40.0 24.0 41.0 43 34.87144152450618 38.0 34.0 40.0 24.0 41.0 44 34.817646901290445 37.0 34.0 40.0 24.0 41.0 45 34.74929509570247 37.0 34.0 40.0 24.0 41.0 46 34.5781095174514 37.0 34.0 40.0 23.0 41.0 47 34.47423512623239 37.0 33.0 40.0 23.0 41.0 48 34.409536963000654 37.0 33.0 40.0 23.0 41.0 49 34.267071691732056 36.0 33.0 40.0 23.0 41.0 50 34.08808912591867 36.0 33.0 40.0 23.0 41.0 51 32.59742217359201 35.0 31.0 39.0 19.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 1.0 10 2.0 11 1.0 12 6.0 13 7.0 14 15.0 15 23.0 16 46.0 17 104.0 18 173.0 19 328.0 20 625.0 21 1102.0 22 1567.0 23 1882.0 24 2313.0 25 2762.0 26 3027.0 27 3418.0 28 3964.0 29 4509.0 30 5516.0 31 6536.0 32 8503.0 33 11371.0 34 18298.0 35 22025.0 36 22498.0 37 30957.0 38 47457.0 39 62334.0 40 13.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 45.700370720360546 17.794194725747275 22.350344131026116 14.155090422866062 2 30.213900674489157 26.76761686873286 25.466461093491162 17.552021363286823 3 31.823416212990136 26.28709594732634 25.834120811223375 16.05536702846015 4 27.672036819533023 26.167730877677585 27.92989597640244 18.23033632638695 5 26.84336777831764 30.050921444776442 23.775455940133828 19.33025483677209 6 23.69587922703466 38.445882096387294 23.80453204684314 14.053706629734911 7 80.78604959006516 6.669140686272634 9.119950417586454 3.4248593060757586 8 83.23762448208186 7.881155239629203 5.791501360073149 3.089718918215798 9 77.93161758798391 7.465672977967197 7.337508560235364 7.265200873813522 10 43.955039157098966 24.493176679432096 15.626877034849244 15.924907128619688 11 33.02663141826362 27.038101177199742 20.537295845559964 19.397971558976675 12 27.09778371202412 24.199737549878915 27.22747845116171 21.475000286935263 13 26.11378704812478 24.762130666493228 28.731019232314264 20.39306305306772 14 22.62848004652177 28.545850342218127 27.691930997807813 21.13373861345229 15 22.266941614412566 25.401039853395208 29.361129071133163 22.97088946105906 16 24.355447752914305 23.874544251156347 27.719094202759937 24.05091379316941 17 24.18213885371275 25.849041444929473 26.40033973135208 23.5684799700057 18 25.43508950467322 24.28581812895253 26.111491566016156 24.167600800358095 19 25.771377633587495 25.490563655631775 24.453388322882514 24.28467038789822 20 27.84266765627451 24.96336793134978 25.53264749428999 21.66131691808572 21 26.894250965058937 26.855992929915107 25.665402876239078 20.584353228786874 22 25.309985729752892 23.465948435820234 26.57900475547377 24.645061078953105 23 26.187625055952374 25.743066687581056 24.90712861968835 23.162179636778216 24 23.11856547671425 27.114617247487406 26.653225343652803 23.11359193214555 25 24.55362437495935 27.388927359468674 25.204776133107355 22.852672132464622 26 23.497702604989612 25.525378467612658 26.77565105611306 24.201267871284667 27 25.993656817773154 25.220844507867763 25.619493234066486 23.166005440292597 28 23.332045312816824 26.928300616336948 27.619240731034534 22.120413339811694 29 24.273958138057946 25.450010138379316 26.931743839499887 23.34428788406285 30 24.253298799080277 27.508675009468863 26.081650298603964 22.156375892846896 31 26.070555468412255 25.885386578316112 23.970189339015928 24.07386861425571 32 27.048430846688575 26.626827299403555 23.603294781986587 22.72144707192128 33 25.753396357069892 26.000160683747602 23.811801073520467 24.434641885662035 34 23.47742584636338 26.671206620170402 24.956481485023893 24.894886048442324 35 26.09159738774136 26.555667354036032 24.31106843214746 23.041666826075147 36 24.992444038059094 28.585256118416268 24.281609745086712 22.140690098437922 37 25.404483076558154 27.284482923526017 24.416660609144436 22.894373390771396 38 24.420486412658818 28.144140973207897 24.427372858984707 23.007999755148575 39 24.881495736141986 26.516644158189322 24.484377331349016 24.117482774319676 40 23.834373314255327 26.6761801647391 26.339892035824825 23.14955448518075 41 22.72603803613854 26.1688786187319 25.598451314737382 25.506632030392183 42 23.35040916968586 26.647486638381224 25.50433654828355 24.497767643649357 43 24.2884961914126 24.61292432943229 26.163905074163203 24.93467440499191 44 24.61713271329811 24.654243007387628 26.69186595914807 24.036758320166193 45 23.97669320499038 24.912484744608488 26.229326314259154 24.881495736141986 46 25.149301982148803 26.563318961064798 24.65271268598187 23.634666370804528 47 23.633518629750213 27.440193126561407 26.41946874892399 22.50681949476439 48 23.509180015532763 27.10428757799857 25.774438276399003 23.612094130069668 49 24.40212255578978 26.603872478317257 26.422911972086936 22.571092993806026 50 23.945704196523877 25.713990580871748 27.02432828454796 23.315976938056416 51 23.373363990772162 26.20331085036135 25.47105205770842 24.95227310115807 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 799.0 1 898.0 2 997.0 3 1258.0 4 1519.0 5 1133.0 6 747.0 7 743.5 8 740.0 9 770.5 10 801.0 11 834.5 12 868.0 13 863.0 14 858.0 15 823.5 16 789.0 17 739.0 18 689.0 19 687.5 20 686.0 21 694.0 22 702.0 23 785.0 24 868.0 25 1115.5 26 1757.5 27 2152.0 28 2561.5 29 2971.0 30 3318.0 31 3665.0 32 3926.5 33 4188.0 34 4913.0 35 5638.0 36 6409.0 37 7180.0 38 7716.0 39 8252.0 40 9124.0 41 9996.0 42 11186.5 43 12377.0 44 14623.0 45 16869.0 46 16446.0 47 16023.0 48 17174.0 49 18325.0 50 17603.0 51 16881.0 52 16664.0 53 16447.0 54 16034.5 55 15622.0 56 15282.5 57 14943.0 58 14508.0 59 14073.0 60 13473.5 61 12874.0 62 12068.5 63 11263.0 64 10255.0 65 9247.0 66 8435.0 67 7623.0 68 7058.5 69 6494.0 70 5646.5 71 4799.0 72 4264.5 73 3730.0 74 3197.0 75 2388.0 76 2112.0 77 1618.0 78 1124.0 79 884.0 80 644.0 81 499.5 82 355.0 83 288.5 84 222.0 85 165.0 86 108.0 87 82.5 88 57.0 89 39.5 90 22.0 91 15.0 92 8.0 93 7.5 94 7.0 95 4.0 96 1.0 97 0.5 98 0.0 99 0.5 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 261383.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 31.863204569539715 #Duplication Level Percentage of deduplicated Percentage of total 1 69.81569310199916 22.24551711473202 2 7.694062556282644 4.903149784033391 3 3.8482319745452362 3.6785100790793583 4 2.5838986612235098 3.2932516651809793 5 1.9139100678393468 3.0491654009633375 6 1.656961037401693 3.1677653099092136 7 1.3832022573092395 3.0851279539985383 8 1.173080386624242 2.9902480268418374 9 1.0590142282523864 3.0369228297173114 >10 8.798703247883772 47.04934903953203 >50 0.04562646334874227 0.9981521369025529 >100 0.022813231674371135 1.3948879613440812 >500 0.004802785615657081 1.1079526977653482 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source GAATGATACCTGTCTCTTATACACATCTGACGCTGTCAAAGTCGTATGCCG 854 0.32672362012831746 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 714 0.27316237092695395 No Hit GAATCTGTCTCTTATACACATCTGACGCTGTCAAAGTCGTATGCCGTCTTC 672 0.2570939961665449 No Hit AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 656 0.25097271054353193 No Hit GAATGATACGGCTGTCTCTTATACACATCTGACGCTGTCAAAGTCGTATGC 468 0.17904760447312948 No Hit TATGAAAACTATGCCCTCGTGTACTCCTGCACCACCTTCTTCTGGCTCTTC 419 0.16030116725265225 No Hit GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 331 0.12663409632608089 No Hit GGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT 275 0.10520959664553549 No Hit >>END_MODULE >>Adapter Content warn #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 3.8258035143831084E-4 0.0 0.0 0.020276758626230473 0.0 2 3.8258035143831084E-4 0.0 0.0 0.18210824728463595 0.0 3 3.8258035143831084E-4 0.0 0.0 0.24255594281188908 0.0 4 3.8258035143831084E-4 0.0 0.0 0.3711029408951615 0.0 5 3.8258035143831084E-4 0.0 0.0 0.8458851570301053 0.0 6 3.8258035143831084E-4 0.0 0.0 1.117517206551306 0.0 7 3.8258035143831084E-4 0.0 0.0 1.3359705872225813 0.0 8 3.8258035143831084E-4 0.0 0.0 1.7017174031976066 0.0 9 3.8258035143831084E-4 0.0 0.0 1.858575347287314 0.0 10 3.8258035143831084E-4 0.0 0.0 2.4779729362659393 0.0 11 3.8258035143831084E-4 0.0 0.0 2.790541083391039 0.0 12 3.8258035143831084E-4 0.0 0.0 3.263027817417353 0.0 13 3.8258035143831084E-4 0.0 0.0 3.3927225565549404 0.0 14 3.8258035143831084E-4 0.0 0.0 3.4623521805167132 0.0 15 3.8258035143831084E-4 0.0 0.0 3.57177016102807 0.0 16 3.8258035143831084E-4 0.0 0.0 3.7336016496864755 0.0 17 3.8258035143831084E-4 0.0 0.0 3.9317782717315204 0.0 18 3.8258035143831084E-4 0.0 0.0 4.152144554159987 0.0 19 3.8258035143831084E-4 0.0 0.0 4.344199890582019 0.0 20 3.8258035143831084E-4 0.0 0.0 4.489580424128578 0.0 21 3.8258035143831084E-4 0.0 0.0 4.6330480559179446 0.0 22 3.8258035143831084E-4 0.0 0.0 4.79028858035909 0.0 23 3.8258035143831084E-4 0.0 0.0 4.942172979880099 0.0 24 3.8258035143831084E-4 0.0 0.0 5.0684244958547415 0.0 25 3.8258035143831084E-4 0.0 0.0 5.182050860231921 0.0 26 3.8258035143831084E-4 0.0 0.0 5.3132759207752605 0.0 27 3.8258035143831084E-4 0.0 0.0 5.44258807956141 0.0 28 3.8258035143831084E-4 0.0 0.0 5.558509926047218 0.0 29 3.8258035143831084E-4 0.0 0.0 5.695473691862134 0.0 30 3.8258035143831084E-4 0.0 0.0 5.865339367900743 0.0 31 3.8258035143831084E-4 0.0 0.0 6.000390231958467 0.0 32 3.8258035143831084E-4 0.0 0.0 6.133528194258999 0.0 33 3.8258035143831084E-4 0.0 0.0 6.273170022533983 0.0 34 3.8258035143831084E-4 0.0 0.0 6.404395083077324 0.0 35 3.8258035143831084E-4 0.0 0.0 6.554366580841141 0.0 36 3.8258035143831084E-4 0.0 0.0 6.6875045431416735 0.0 37 3.8258035143831084E-4 0.0 0.0 6.8271463714166565 0.0 38 3.8258035143831084E-4 0.0 0.0 6.966405619340202 0.0 39 3.8258035143831084E-4 0.0 0.0 7.106047447615185 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CATGCGG 40 6.7811925E-9 45.000004 2 GTGGAAC 20 7.0232735E-4 45.000004 35 CGTAGCC 20 7.0232735E-4 45.000004 39 GGTATGC 20 7.0232735E-4 45.000004 8 TCGTTCA 25 3.8825106E-5 45.0 16 ACGGGTA 35 1.2071177E-7 45.0 5 CGTTAGG 25 3.8825106E-5 45.0 2 CGAATGC 50 2.1827873E-11 45.0 45 AGTTCGC 25 3.8825106E-5 45.0 37 CGTCGAC 25 3.8825106E-5 45.0 43 CTAGGGA 100 0.0 45.0 4 CGTATGG 30 2.1590458E-6 44.999996 2 GATGAAT 325 0.0 43.615387 20 CGATGAA 330 0.0 42.272728 19 TGAATGA 325 0.0 41.538464 22 ATAGCGG 60 3.6379788E-12 41.249996 2 TCAAGCG 60 3.6379788E-12 41.249996 17 GTTGATC 110 0.0 40.909092 16 TACACGC 90 0.0 40.000004 35 ATGAATG 350 0.0 39.857143 21 >>END_MODULE