SRR3553608_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3553608_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	544509
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1568	0.28796585547713627	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1043	0.191548716366488	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	897	0.16473556910905054	No Hit
GGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT	638	0.11716978048113069	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACGTTGA	20	7.030011E-4	45.000004	24
TACGAAT	75	0.0	45.000004	12
ACGGATC	20	7.030011E-4	45.000004	19
CGTACTA	20	7.030011E-4	45.000004	32
ATAACGG	40	6.8030204E-9	45.000004	2
ATGCCCG	20	7.030011E-4	45.000004	1
TAGTCCG	20	7.030011E-4	45.000004	13
GTTATGC	20	7.030011E-4	45.000004	38
CGTCTAC	25	3.8880928E-5	45.0	10
ACGGGTA	90	0.0	45.0	5
TATAGCG	25	3.8880928E-5	45.0	1
TATACGG	45	3.8380676E-10	45.0	2
GTTACGG	65	0.0	41.538464	2
GCGATTG	120	0.0	41.249996	9
TTACGGG	120	0.0	41.249996	3
TTGCGCA	50	1.0786607E-9	40.5	1
TTTACGG	45	1.9250365E-8	40.0	2
CGACAGG	90	0.0	40.0	2
GGCGATA	170	0.0	39.705883	8
ATGACGG	40	3.4537516E-7	39.375004	2