##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3553597_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 1051874 Sequences flagged as poor quality 0 Sequence length 51 %GC 47 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.973909422611452 33.0 31.0 34.0 30.0 34.0 2 32.068142191935536 33.0 31.0 34.0 30.0 34.0 3 32.054287870980744 33.0 31.0 34.0 30.0 34.0 4 35.706244284011206 37.0 35.0 37.0 33.0 37.0 5 35.6125591087906 37.0 35.0 37.0 33.0 37.0 6 35.59153853028024 37.0 35.0 37.0 33.0 37.0 7 35.92187372251809 37.0 35.0 37.0 35.0 37.0 8 35.85814365598922 37.0 35.0 37.0 35.0 37.0 9 37.55653243639447 39.0 37.0 39.0 35.0 39.0 10 36.89629556391735 39.0 37.0 39.0 32.0 39.0 11 36.89052396009408 39.0 37.0 39.0 33.0 39.0 12 36.89162009898524 39.0 37.0 39.0 33.0 39.0 13 36.91677995653472 39.0 37.0 39.0 33.0 39.0 14 38.040352741868325 40.0 37.0 41.0 33.0 41.0 15 38.17097199854735 40.0 37.0 41.0 33.0 41.0 16 38.18068608977882 40.0 37.0 41.0 33.0 41.0 17 38.11518679993992 40.0 37.0 41.0 33.0 41.0 18 38.072618963868294 40.0 37.0 41.0 33.0 41.0 19 37.984092201157175 40.0 37.0 41.0 33.0 41.0 20 37.934529230687325 40.0 37.0 41.0 33.0 41.0 21 37.81333315587228 40.0 36.0 41.0 33.0 41.0 22 37.830189737554115 40.0 36.0 41.0 33.0 41.0 23 37.746938321509994 40.0 36.0 41.0 33.0 41.0 24 37.71948161091537 40.0 36.0 41.0 33.0 41.0 25 37.60334697882066 40.0 36.0 41.0 33.0 41.0 26 37.57777737637778 40.0 36.0 41.0 33.0 41.0 27 37.53372457157416 40.0 36.0 41.0 33.0 41.0 28 37.426549187450206 40.0 36.0 41.0 32.0 41.0 29 37.39405004781941 39.0 36.0 41.0 32.0 41.0 30 37.24463101093857 39.0 35.0 41.0 32.0 41.0 31 37.16816652945125 39.0 35.0 41.0 31.0 41.0 32 37.03374548662673 39.0 35.0 41.0 31.0 41.0 33 36.91641109106224 39.0 35.0 41.0 31.0 41.0 34 36.8019639234357 39.0 35.0 41.0 31.0 41.0 35 36.711391288310196 39.0 35.0 41.0 30.0 41.0 36 36.57209893960683 39.0 35.0 41.0 30.0 41.0 37 36.52768772685702 39.0 35.0 41.0 30.0 41.0 38 36.42190984851798 39.0 35.0 41.0 30.0 41.0 39 36.34425701177137 39.0 35.0 41.0 30.0 41.0 40 36.235751620441235 39.0 35.0 41.0 30.0 41.0 41 36.11762150219513 39.0 35.0 41.0 29.0 41.0 42 36.01887773630682 39.0 35.0 40.0 29.0 41.0 43 35.932895004534764 39.0 35.0 40.0 29.0 41.0 44 35.8606382513495 38.0 35.0 40.0 28.0 41.0 45 35.78797555600766 38.0 35.0 40.0 28.0 41.0 46 35.66824543624046 38.0 35.0 40.0 28.0 41.0 47 35.562671004321814 38.0 34.0 40.0 28.0 41.0 48 35.46512319916644 38.0 34.0 40.0 27.0 41.0 49 35.362915140026274 38.0 34.0 40.0 27.0 41.0 50 35.237077824910585 38.0 34.0 40.0 27.0 41.0 51 33.76685705702394 36.0 32.0 39.0 23.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 3.0 9 8.0 10 10.0 11 9.0 12 15.0 13 18.0 14 35.0 15 56.0 16 125.0 17 243.0 18 404.0 19 745.0 20 1378.0 21 2137.0 22 3272.0 23 4339.0 24 5939.0 25 7847.0 26 10054.0 27 11774.0 28 13164.0 29 15270.0 30 18756.0 31 23916.0 32 30699.0 33 40932.0 34 65146.0 35 80987.0 36 86893.0 37 126045.0 38 208364.0 39 293213.0 40 78.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 44.4855562548366 18.681800291669916 23.615471054517936 13.217172398975544 2 32.11506321099295 24.92941169759876 25.432989122271298 17.52253596913699 3 32.16392837925455 24.684325308924834 26.984600817208143 16.167145494612473 4 27.54797627852766 27.07168349060819 26.21540222498132 19.164938005882835 5 24.894521587186297 31.414694155383632 25.110802244375275 18.579982013054796 6 23.899725632537738 37.4754010461329 24.86809256621991 13.756780755109451 7 83.55744129049677 5.859256907196109 7.419805033682741 3.163496768624379 8 85.98178108784893 5.298068019553673 5.836725691480158 2.883425201117244 9 80.1935402909474 7.583702991042654 7.800458990335344 4.422297727674607 10 38.08326852835986 28.191209213270792 17.850712157539782 15.874810100829567 11 30.512970184641887 27.632777309829887 22.913866109438963 18.940386396089266 12 25.45352390115166 25.55667313765717 28.997484489587155 19.992318471604015 13 24.736898145595383 26.829354086135794 29.3513291515904 19.082418616678424 14 22.780390046716622 28.971720947565966 28.72596907994684 19.52191992577058 15 22.624667973540557 27.372670110678655 30.639886526333004 19.362775389447787 16 25.09397513390387 25.953583794256723 29.21633199413618 19.736109077703222 17 25.217564080869003 25.801569389489615 27.913799561544444 21.06706696809694 18 25.9858119888884 25.22155695454018 28.125516934537785 20.667114122033627 19 24.827498350562898 27.937661735150787 26.85454721763253 20.380292696653783 20 25.796815968452496 26.555081692293943 27.258397868946282 20.38970447030728 21 24.987878776355345 27.771006793589347 27.45138676305337 19.78972766700194 22 25.096541981263915 25.278502938564884 27.196413258622233 22.42854182154897 23 23.06331366684603 28.1766637448972 27.259348553153707 21.500674035103064 24 22.375493642774703 28.097852024101744 28.337804718055587 21.188849615067966 25 23.113319656156538 28.569581527825576 27.476865099812336 20.840233716205553 26 23.042113409020473 28.17694895015943 26.95636549624765 21.82457214457245 27 23.574306428336474 27.191659837585107 27.98472060341828 21.249313130660134 28 22.734471999498037 28.237697671013827 28.687656506387647 20.340173823100486 29 23.5263919442823 27.11028126942961 27.414595284226056 21.94873150206203 30 23.069017772090575 28.224673297372117 27.458326757767566 21.247982172769742 31 24.115911221305975 28.092338055698683 26.32891391934776 21.462836803647587 32 24.184645689502734 27.677554535999562 27.355462726524284 20.782337047973424 33 23.895637690445813 27.64456579400194 26.08563383066793 22.37416268488431 34 22.865856556964047 28.351684707483976 26.764897696872442 22.01756103867954 35 23.55244069156572 27.277506621515506 27.24860582160981 21.921446865308962 36 23.87776482734624 29.346195456870312 25.796815968452496 20.979223747330956 37 23.367912886904705 28.62300998028281 26.97880164354286 21.030275489269627 38 22.747971715243462 29.091507157701397 26.844660101875316 21.31586102517982 39 23.472107876038383 27.93300338253441 26.68389940239991 21.9109893390273 40 23.86854319053423 27.48256920505688 27.134618785139665 21.514268819269226 41 22.856634920152032 27.111707295740743 27.11009113258812 22.9215666515191 42 23.12016458244999 27.56508859426129 27.46830894194552 21.846437881343203 43 23.0361240985137 27.326181652935617 27.59864774678336 22.039046501767324 44 23.200307261135837 27.699990683294768 27.07757773269422 22.02212432287517 45 22.990491256557345 27.904482856311684 26.614309318416463 22.490716568714504 46 23.358406044830467 28.162593618627323 26.324635840414345 22.15436449612786 47 22.859582041195047 27.66766742024235 27.8655048038073 21.607245734755303 48 23.15343852970983 27.938042008833758 26.955034538357253 21.953484923099154 49 22.627329889321345 27.88062068270534 27.585052962617198 21.906996465356116 50 22.43576702152539 27.091647858964095 28.16420978177995 22.308375337730567 51 22.341173942886698 27.18937819548729 26.700536376029827 23.768911485596185 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 1912.0 1 2018.0 2 2124.0 3 3826.5 4 5529.0 5 4003.0 6 2477.0 7 2445.5 8 2414.0 9 2502.5 10 2591.0 11 2646.5 12 2702.0 13 2794.0 14 2886.0 15 2757.5 16 2629.0 17 2744.0 18 2859.0 19 2992.0 20 3125.0 21 3686.5 22 4248.0 23 4542.5 24 4837.0 25 5599.0 26 7931.5 27 9502.0 28 11707.0 29 13912.0 30 16116.5 31 18321.0 32 21237.5 33 24154.0 34 28004.0 35 31854.0 36 34826.5 37 37799.0 38 41284.0 39 44769.0 40 48827.0 41 52885.0 42 57179.0 43 61473.0 44 65442.0 45 69411.0 46 75069.0 47 80727.0 48 83269.0 49 85811.0 50 85180.5 51 84550.0 52 79569.0 53 74588.0 54 70727.0 55 66866.0 56 61294.0 57 55722.0 58 51349.0 59 46976.0 60 41527.0 61 36078.0 62 32683.5 63 29289.0 64 26116.0 65 22943.0 66 19561.5 67 16180.0 68 14115.0 69 12050.0 70 10558.0 71 9066.0 72 8252.5 73 7439.0 74 6280.5 75 4483.5 76 3845.0 77 2799.0 78 1753.0 79 1375.0 80 997.0 81 704.0 82 411.0 83 355.5 84 300.0 85 220.0 86 140.0 87 151.0 88 162.0 89 101.5 90 41.0 91 32.5 92 24.0 93 18.5 94 13.0 95 8.5 96 4.0 97 3.0 98 2.0 99 1.5 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 1051874.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 26.052718423148935 #Duplication Level Percentage of deduplicated Percentage of total 1 73.29065035867845 19.09420676844109 2 8.75181510734135 4.560171493660503 3 3.403254788051372 2.659921161460075 4 1.9363473739248356 2.017884516090705 5 1.3285909016259136 1.730670232980875 6 0.9952462138770342 1.555732162310606 7 0.8043737121563064 1.466928528085391 8 0.7016939230387077 1.4624827356929753 9 0.6077227349803045 1.4249546364409056 >10 6.9921298100645926 41.165687419986455 >50 1.1054842740659196 18.83105814130419 >100 0.0790156554309094 3.0353892679739163 >500 0.00257260273495965 0.484386925325823 >1k 0.0011025440292684215 0.5105260102465484 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 2713 0.25792062547415373 No Hit AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 1577 0.1499228995107779 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 9.506842074240831E-5 0.0 0.0 0.0308972367412827 0.0 2 9.506842074240831E-5 0.0 0.0 0.1760667152149402 0.0 3 9.506842074240831E-5 0.0 0.0 0.2546882991689119 0.0 4 9.506842074240831E-5 0.0 0.0 0.3947240829224793 0.0 5 9.506842074240831E-5 0.0 0.0 0.8100780131460612 0.0 6 9.506842074240831E-5 0.0 0.0 1.1614508962100023 0.0 7 9.506842074240831E-5 0.0 0.0 1.4287832953376545 0.0 8 9.506842074240831E-5 0.0 0.0 1.8679043307468386 0.0 9 9.506842074240831E-5 0.0 0.0 2.0730619827089556 0.0 10 9.506842074240831E-5 0.0 0.0 2.6076317125435176 0.0 11 9.506842074240831E-5 0.0 0.0 3.1261348792726125 0.0 12 9.506842074240831E-5 0.0 0.0 3.5872167198732927 0.0 13 9.506842074240831E-5 0.0 0.0 3.7750719192602915 0.0 14 9.506842074240831E-5 0.0 0.0 3.86262993476405 0.0 15 9.506842074240831E-5 0.0 0.0 3.99962352905386 0.0 16 9.506842074240831E-5 0.0 0.0 4.271424143956406 0.0 17 9.506842074240831E-5 0.0 0.0 4.616522511251348 0.0 18 9.506842074240831E-5 0.0 0.0 4.998507425794344 0.0 19 1.9013684148481663E-4 0.0 0.0 5.225625882947957 0.0 20 1.9013684148481663E-4 0.0 0.0 5.448656398009647 0.0 21 1.9013684148481663E-4 0.0 0.0 5.716749344503239 0.0 22 1.9013684148481663E-4 0.0 0.0 6.016975417207765 0.0 23 1.9013684148481663E-4 0.0 0.0 6.339732705628241 0.0 24 1.9013684148481663E-4 0.0 0.0 6.593660457431214 0.0 25 1.9013684148481663E-4 0.0 0.0 6.831426577707976 0.0 26 1.9013684148481663E-4 0.0 0.0 7.062632976953513 0.0 27 1.9013684148481663E-4 0.0 0.0 7.300399097230277 0.0 28 1.9013684148481663E-4 0.0 0.0 7.5398764490804036 0.0 29 2.852052622272249E-4 0.0 0.0 7.800839264018314 0.0 30 2.852052622272249E-4 0.0 0.0 8.118557926139443 0.0 31 3.8027368296963325E-4 0.0 0.0 8.39910483575029 0.0 32 4.753421037120416E-4 0.0 0.0 8.67822571905 0.0 33 4.753421037120416E-4 0.0 0.0 8.96951536020474 0.0 34 4.753421037120416E-4 0.0 0.0 9.25025240665707 0.0 35 4.753421037120416E-4 0.0 0.0 9.54192232149478 0.0 36 5.704105244544498E-4 0.0 0.0 9.83482812580214 0.0 37 5.704105244544498E-4 0.0 0.0 10.139142140598588 0.0 38 5.704105244544498E-4 0.0 0.0 10.450110944847006 0.0 39 5.704105244544498E-4 0.0 0.0 10.75223838596638 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TAACGCG 20 7.033014E-4 45.0 1 CGTAAAT 20 7.033014E-4 45.0 30 CAATGCG 35 1.2117926E-7 45.0 1 ACGGGCT 230 0.0 40.108692 5 CGTATGG 135 0.0 40.0 2 CGAATGG 110 0.0 38.863636 2 TCGTTTA 35 6.2477848E-6 38.571426 38 TATAGCG 70 0.0 38.571426 1 TCGACTA 35 6.2477848E-6 38.571426 1 TCGACAG 35 6.2477848E-6 38.571426 1 TAGGGCG 450 0.0 38.0 5 CGTTTTT 2135 0.0 37.728336 1 CGTAAGG 150 0.0 37.5 2 TCGTTAG 30 1.1398561E-4 37.499996 1 CTCGTAT 30 1.1398561E-4 37.499996 9 TACGTAC 30 1.1398561E-4 37.499996 40 GTTACGG 110 0.0 36.81818 2 ATGCGAG 55 2.748493E-9 36.81818 1 TCGTTGA 130 0.0 36.346153 24 TAATCGT 155 0.0 36.290325 21 >>END_MODULE