SRR3553596_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3553596_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	902394
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1794	0.19880451332788115	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1712	0.189717573476774	No Hit
GGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT	933	0.10339164489125592	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACGTTAG	30	2.1649812E-6	45.000004	1
ATAACGC	35	1.2115379E-7	45.000004	11
TATTTCG	20	7.03248E-4	45.0	1
CGTATAG	25	3.8901366E-5	45.0	2
CGTATAC	20	7.03248E-4	45.0	35
CGAAACT	20	7.03248E-4	45.0	29
TAGCCCG	20	7.03248E-4	45.0	1
AACGCTA	20	7.03248E-4	45.0	28
ACGCTAC	20	7.03248E-4	45.0	29
TCGTAAG	25	3.8901366E-5	45.0	1
TAATGCG	40	6.8121153E-9	45.0	1
GCGTAAG	80	0.0	42.1875	1
GTATGCG	75	0.0	42.0	1
AACGAGC	205	0.0	40.609756	15
GCCGATT	45	1.927583E-8	40.0	9
TACGAAT	90	0.0	40.0	12
ATTTCGG	45	1.927583E-8	40.0	2
ACGGGAT	170	0.0	39.705883	5
AATGCCG	40	3.4571167E-7	39.375	1
CTCGTAC	75	0.0	39.0	29