SRR3553592_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3553592_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	314225
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1760	0.5601082027209802	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	981	0.31219667435754633	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	870	0.2768716683904845	No Hit
ATTCCTCCAGATCTCTACGCATTTCACCGCTACACCTGGAATTCTACCCCC	440	0.14002705068024504	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCCGTCGCATTCGTATGCC	412	0.13111623836422948	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	368	0.11711353329620494	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	351	0.11170339724719548	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTATCGG	30	2.16045E-6	45.000004	2
AACCTAG	30	2.16045E-6	45.000004	1
CAGCGCG	25	3.884315E-5	45.0	1
TTTACGA	25	3.884315E-5	45.0	16
TCCTGAT	20	7.025454E-4	45.0	38
GGACTAT	35	1.2081546E-7	45.0	8
ATATGCG	20	7.025454E-4	45.0	1
CCCGTAG	20	7.025454E-4	45.0	19
TACGCCC	20	7.025454E-4	45.0	19
ACGGCTA	20	7.025454E-4	45.0	15
GGACGTA	20	7.025454E-4	45.0	8
ACGCTAA	20	7.025454E-4	45.0	41
GCGATAC	35	1.2081546E-7	45.0	9
CTTTACG	25	3.884315E-5	45.0	15
ATCGGGC	20	7.025454E-4	45.0	4
CGACTCC	20	7.025454E-4	45.0	28
TGTACGC	20	7.025454E-4	45.0	17
ACGAGAC	40	6.7884685E-9	45.0	25
CCGTTTG	25	3.884315E-5	45.0	27
GCCCGTA	20	7.025454E-4	45.0	18