SRR3553591_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3553591_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	671596
Sequences flagged as poor quality	0
Sequence length	51
%GC	50

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACCTGTCTCTTATACACATCTGACGCTGGTGGCTTCGTATGCCG	3269	0.486750963376792	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCTGGTGGCTTCGTATGC	2096	0.3120923888766461	No Hit
GAATCTGTCTCTTATACACATCTGACGCTGGTGGCTTCGTATGCCGTCTTC	1953	0.2907998260859207	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1763	0.2625090083919499	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1418	0.21113883942131878	No Hit
TATGAAAACTATGCCCTCGTGTACTCCTGCACCACCTTCTTCTGGCTCTTC	1025	0.15262151650694764	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	876	0.13043555947325475	No Hit
GCTGTCTCTTATACACATCTGACGCTGGTGGCTTCGTATGCCGTCTTCTGC	845	0.1258196892179227	No Hit
GGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT	786	0.11703464582874229	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCTGGTGGCTT	713	0.10616501587263773	No Hit
TGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT	678	0.10095354945532731	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TACCCGT	20	7.0311886E-4	45.000004	37
CATGCGG	70	0.0	45.000004	2
CTATCGA	20	7.0311886E-4	45.000004	2
CGAGGGT	75	0.0	45.000004	4
TGTTACG	20	7.0311886E-4	45.000004	31
ATAGTCG	20	7.0311886E-4	45.000004	1
CGTCATC	20	7.0311886E-4	45.000004	37
CGCATCG	45	3.8380676E-10	45.0	21
TAACGCC	45	3.8380676E-10	45.0	12
TCTAGCG	25	3.8890677E-5	45.0	1
CGTTCAT	25	3.8890677E-5	45.0	17
TATAGCG	25	3.8890677E-5	45.0	1
TATCGTC	25	3.8890677E-5	45.0	17
CTCCGTA	30	2.16415E-6	44.999996	43
GTAATCG	30	2.16415E-6	44.999996	18
TATCGAG	30	2.16415E-6	44.999996	1
TCGAATA	30	2.16415E-6	44.999996	44
CTCGAAT	85	0.0	42.35294	43
CGAATGC	165	0.0	42.272728	45
CATCGAA	150	0.0	42.000004	42