SRR3553588_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3553588_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	568050
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	3011	0.5300589736818943	No Hit
CTGTCTCTTATACACATCTGACGCCTTCTACGTCGTATGCCGTCTTCTGCT	2192	0.3858815245136872	No Hit
AATCTGTCTCTTATACACATCTGACGCCTTCTACGTCGTATGCCGTCTTCT	1284	0.22603644045418536	No Hit
AATGATACCTGTCTCTTATACACATCTGACGCCTTCTACGTCGTATGCCGT	1217	0.21424170407534546	No Hit
AATGATACGGCTGTCTCTTATACACATCTGACGCCTTCTACGTCGTATGCC	1181	0.2079042337822375	No Hit
AAACTGTCTCTTATACACATCTGACGCCTTCTACGTCGTATGCCGTCTTCT	741	0.13044626353313968	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	682	0.12005985388610158	No Hit
TGCAAAGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGG	681	0.11988381304462636	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	667	0.11741924126397324	No Hit
AAAAACTGTCTCTTATACACATCTGACGCCTTCTACGTCGTATGCCGTCTT	593	0.1043922189948068	No Hit
AGAGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT	583	0.10263181058005456	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CCGTAGT	30	2.163555E-6	45.000004	27
TCATACG	30	2.163555E-6	45.000004	1
TATCGCG	30	2.163555E-6	45.000004	1
ATTTACG	20	7.03027E-4	45.0	1
TCGTTCA	55	1.8189894E-12	45.0	16
TCCGAAC	20	7.03027E-4	45.0	43
CGCATCG	20	7.03027E-4	45.0	21
ATTCGGT	20	7.03027E-4	45.0	19
TTCGTAG	25	3.8883056E-5	45.0	18
TTGTAAC	20	7.03027E-4	45.0	41
GTCAGGT	20	7.03027E-4	45.0	12
ATCCGGT	25	3.8883056E-5	45.0	9
GTTACGT	20	7.03027E-4	45.0	33
TACGCAA	20	7.03027E-4	45.0	1
CGCTAAC	25	3.8883056E-5	45.0	31
CGGTCTA	20	7.03027E-4	45.0	31
CGACTAC	25	3.8883056E-5	45.0	36
TTATTCG	20	7.03027E-4	45.0	17
ACGACAG	25	3.8883056E-5	45.0	1
CGGGTTA	80	0.0	42.1875	6