SRR3553587_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3553587_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	663561
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	3698	0.5572961641808365	No Hit
CTGTCTCTTATACACATCTGACGCCTTCTACGTCGTATGCCGTCTTCTGCT	2219	0.3344078389175976	No Hit
AATGATACGGCTGTCTCTTATACACATCTGACGCCTTCTACGTCGTATGCC	1359	0.2048040798057752	No Hit
AATGATACCTGTCTCTTATACACATCTGACGCCTTCTACGTCGTATGCCGT	1322	0.19922810412305725	No Hit
AATCTGTCTCTTATACACATCTGACGCCTTCTACGTCGTATGCCGTCTTCT	1321	0.1990774020775784	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	823	0.12402778342910448	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	816	0.12297286911075243	No Hit
TGCAAAGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGG	781	0.11769829751899223	No Hit
AAACTGTCTCTTATACACATCTGACGCCTTCTACGTCGTATGCCGTCTTCT	754	0.1136293422910629	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGAACTA	25	3.8890164E-5	45.0	40
TCGCACG	20	7.031128E-4	45.0	1
CTATCCG	25	3.8890164E-5	45.0	1
CTATACG	20	7.031128E-4	45.0	1
TCGATAG	25	3.8890164E-5	45.0	1
TCTAGCG	20	7.031128E-4	45.0	1
TAGCCGT	20	7.031128E-4	45.0	44
ACGATAT	25	3.8890164E-5	45.0	35
CGTAGCA	20	7.031128E-4	45.0	38
GAACGAC	20	7.031128E-4	45.0	25
TCGACCA	20	7.031128E-4	45.0	17
ACGACAA	20	7.031128E-4	45.0	40
ATCGATA	20	7.031128E-4	45.0	20
TACCGTT	20	7.031128E-4	45.0	29
TAGTACG	20	7.031128E-4	45.0	1
TGCGTAG	20	7.031128E-4	45.0	1
ACGGGTA	95	0.0	44.999996	5
TACACCG	30	2.16411E-6	44.999996	1
ATAACGG	105	0.0	42.857143	2
CGGGTTA	70	0.0	41.785713	6