SRR3553581_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3553581_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	444324
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	3801	0.855456828800605	No Hit
CTGTCTCTTATACACATCTGACGCCGAGACTTTCGTATGCCGTCTTCTGCT	2799	0.6299457152888432	TruSeq Adapter, Index 13 (95% over 23bp)
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	783	0.17622275636697543	No Hit
AAACTGTCTCTTATACACATCTGACGCCGAGACTTTCGTATGCCGTCTTCT	766	0.17239671951098748	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	697	0.15686751109550687	No Hit
AAAAACTGTCTCTTATACACATCTGACGCCGAGACTTTCGTATGCCGTCTT	538	0.1210828134424429	No Hit
AATCTGTCTCTTATACACATCTGACGCCGAGACTTTCGTATGCCGTCTTCT	517	0.11635653262034013	No Hit
TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	493	0.11095506882365119	No Hit
AATGATACGGCTGTCTCTTATACACATCTGACGCCGAGACTTTCGTATGCC	480	0.10802927593377806	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGACGTC	30	2.1624837E-6	45.000004	43
TTAGCGG	30	2.1624837E-6	45.000004	2
GCGCGAC	60	0.0	45.000004	9
ACGGGTC	30	2.1624837E-6	45.000004	5
TCTAGCG	35	1.2096825E-7	45.000004	1
GTTACGG	35	1.2096825E-7	45.000004	2
AATGCGG	70	0.0	45.000004	2
AGTGCGC	35	1.2096825E-7	45.000004	13
ACCAGTT	30	2.1624837E-6	45.000004	18
GACGGGT	35	1.2096825E-7	45.000004	4
ACGTCGC	30	2.1624837E-6	45.000004	45
ATACGAG	30	2.1624837E-6	45.000004	1
TTACCGG	60	0.0	45.000004	2
CGAAGCA	30	2.1624837E-6	45.000004	14
TAATAGC	20	7.02861E-4	45.0	17
GGTACGT	25	3.88693E-5	45.0	9
CAAACGT	20	7.02861E-4	45.0	37
GTCGATC	25	3.88693E-5	45.0	10
TACTTCG	25	3.88693E-5	45.0	21
ATCTACG	20	7.02861E-4	45.0	1