SRR3553580_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3553580_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	533018
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTGTCTCTTATACACATCTGACGCGCTCCTATTCGTATGCCGTCTTCTGCT	3636	0.6821533231523138	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2631	0.49360434356813465	No Hit
AATCTGTCTCTTATACACATCTGACGCGCTCCTATTCGTATGCCGTCTTCT	1804	0.33845010862672553	No Hit
AATGATACCTGTCTCTTATACACATCTGACGCGCTCCTATTCGTATGCCGT	1366	0.25627652349451613	No Hit
AATGATACGGCTGTCTCTTATACACATCTGACGCGCTCCTATTCGTATGCC	1288	0.2416428713476843	No Hit
AAACTGTCTCTTATACACATCTGACGCGCTCCTATTCGTATGCCGTCTTCT	810	0.15196484921709963	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	658	0.12344798862327351	No Hit
AAAAACTGTCTCTTATACACATCTGACGCGCTCCTATTCGTATGCCGTCTT	585	0.10975239110123862	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TTTACGG	35	1.2102828E-7	45.000004	2
GTCGCTT	20	7.029878E-4	45.0	20
GATCGGA	45	3.8380676E-10	45.0	9
GGTCGCT	20	7.029878E-4	45.0	19
CCTAGCG	40	6.8030204E-9	45.0	1
CGTTGAT	45	3.8380676E-10	45.0	25
TAGCGGA	20	7.029878E-4	45.0	3
GACAACG	20	7.029878E-4	45.0	1
TACGGGT	20	7.029878E-4	45.0	4
CCTCGCA	20	7.029878E-4	45.0	23
ATCGTTG	45	3.8380676E-10	45.0	23
AGTATCG	20	7.029878E-4	45.0	19
TAGCACG	25	3.887981E-5	45.0	1
ACGATAG	20	7.029878E-4	45.0	1
TACGATG	20	7.029878E-4	45.0	1
CATAGCG	40	6.8030204E-9	45.0	1
TCGCTTA	20	7.029878E-4	45.0	21
TACGAAG	45	3.8380676E-10	45.0	1
CATACCG	40	6.8030204E-9	45.0	1
CGTACAA	20	7.029878E-4	45.0	35