SRR3553577_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3553577_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	517504
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	3070	0.5932321296067277	No Hit
CTGTCTCTTATACACATCTGACGCGTACGAAGTCGTATGCCGTCTTCTGCT	2070	0.39999690823645806	No Hit
AATCTGTCTCTTATACACATCTGACGCGTACGAAGTCGTATGCCGTCTTCT	1085	0.20966021518674252	No Hit
AATGATACCTGTCTCTTATACACATCTGACGCGTACGAAGTCGTATGCCGT	920	0.17777640366064804	No Hit
AATGATACGGCTGTCTCTTATACACATCTGACGCGTACGAAGTCGTATGCC	909	0.17565081622557507	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	754	0.14569935691318328	No Hit
TGCAAAGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGG	748	0.14453994558496167	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	624	0.12057877813504825	No Hit
AGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT	622	0.1201923076923077	No Hit
AAACTGTCTCTTATACACATCTGACGCGTACGAAGTCGTATGCCGTCTTCT	618	0.11941936680682662	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AGCCGAT	20	7.029688E-4	45.0	12
ACAGTAC	20	7.029688E-4	45.0	25
AGATCGG	20	7.029688E-4	45.0	2
CGAGTTT	20	7.029688E-4	45.0	22
CCGATCG	20	7.029688E-4	45.0	26
TAGACGG	45	3.8380676E-10	45.0	2
CAATTCG	20	7.029688E-4	45.0	38
TTATCCG	20	7.029688E-4	45.0	1
GCACCGT	55	1.8189894E-12	45.0	24
ACCTATC	20	7.029688E-4	45.0	38
TACGCCC	20	7.029688E-4	45.0	30
GATATCG	20	7.029688E-4	45.0	12
AACGATT	20	7.029688E-4	45.0	10
GCGATTA	35	1.2101918E-7	45.0	23
TCCGTTA	20	7.029688E-4	45.0	31
TCCGTCC	20	7.029688E-4	45.0	42
TCCGTCA	20	7.029688E-4	45.0	45
GCTAGAT	20	7.029688E-4	45.0	40
CGTAACG	20	7.029688E-4	45.0	1
CGGTCTA	20	7.029688E-4	45.0	31