SRR3553576_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3553576_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	397771
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AATCTGTCTCTTATACACATCTGACGCGGTATCTGTCGTATGCCGTCTTCT	1618	0.40676670747741794	No Hit
CTGTCTCTTATACACATCTGACGCGGTATCTGTCGTATGCCGTCTTCTGCT	1599	0.40199008977527273	TruSeq Adapter, Index 16 (95% over 22bp)
AATGATACGGCTGTCTCTTATACACATCTGACGCGGTATCTGTCGTATGCC	1468	0.36905656772364	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1454	0.36553695467995406	No Hit
AATGATACCTGTCTCTTATACACATCTGACGCGGTATCTGTCGTATGCCGT	1286	0.32330159815572274	No Hit
TGCAAAGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGG	556	0.13977891802067016	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AACGTAG	30	2.161909E-6	45.000004	1
AGACTCG	30	2.161909E-6	45.000004	1
CCAACCG	30	2.161909E-6	45.000004	1
CCACACG	30	2.161909E-6	45.000004	1
TTTAGCG	25	3.88619E-5	45.0	1
TATCACG	20	7.0277177E-4	45.0	1
TCACCGG	35	1.209246E-7	45.0	2
ATCTACG	20	7.0277177E-4	45.0	1
TTTACGT	20	7.0277177E-4	45.0	13
CACGCGT	25	3.88619E-5	45.0	39
CGCGACG	40	6.7957444E-9	45.0	1
TCTAGCG	20	7.0277177E-4	45.0	1
GTCGTGA	20	7.0277177E-4	45.0	25
TTAACGG	35	1.209246E-7	45.0	2
ATCGGCG	20	7.0277177E-4	45.0	39
CGCCGTC	20	7.0277177E-4	45.0	42
CGTCAGG	20	7.0277177E-4	45.0	2
TGTAACG	25	3.88619E-5	45.0	1
CGTCAAA	20	7.0277177E-4	45.0	42
TGCGTAG	45	3.8380676E-10	45.0	1