SRR3553569_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3553569_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	380224
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2873	0.7556072210065646	No Hit
CTGTCTCTTATACACATCTGACGCGATTACCGTCGTATGCCGTCTTCTGCT	1982	0.5212716714357852	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	685	0.18015696010772597	No Hit
AAACTGTCTCTTATACACATCTGACGCGATTACCGTCGTATGCCGTCTTCT	662	0.17410789429388993	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	555	0.14596658811647872	No Hit
AAAAACTGTCTCTTATACACATCTGACGCGATTACCGTCGTATGCCGTCTT	526	0.13833950513381585	No Hit
TGCAAAGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGG	514	0.13518347079616225	No Hit
AGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT	426	0.11203921898670258	No Hit
TGCGAAGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGG	397	0.10441213600403973	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGGGTAT	25	3.885864E-5	45.000004	6
GCGACAA	30	2.161656E-6	45.000004	10
CGAGTTC	20	7.0273236E-4	45.000004	23
TAGCGAT	20	7.0273236E-4	45.000004	45
TTGTCGC	100	0.0	45.000004	38
CGATTGA	25	3.885864E-5	45.000004	27
TCTAGTG	20	7.0273236E-4	45.000004	33
GCGTTCG	20	7.0273236E-4	45.000004	33
GCGTTCC	20	7.0273236E-4	45.000004	9
ACGGGTA	80	0.0	45.000004	5
TAGCCCG	20	7.0273236E-4	45.000004	1
CCATGCG	20	7.0273236E-4	45.000004	1
ATACTAG	30	2.161656E-6	45.000004	1
TACGCTA	25	3.885864E-5	45.000004	19
ACGATCC	25	3.885864E-5	45.000004	18
CGCTCGT	20	7.0273236E-4	45.000004	13
TCAGCGA	20	7.0273236E-4	45.000004	19
CGCTATT	25	3.885864E-5	45.000004	21
CATAGCG	20	7.0273236E-4	45.000004	1
CTACGAC	20	7.0273236E-4	45.000004	43