##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3553567_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 405486 Sequences flagged as poor quality 0 Sequence length 51 %GC 47 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 30.948111648737566 31.0 31.0 33.0 28.0 34.0 2 31.137474536728764 31.0 31.0 34.0 28.0 34.0 3 31.385616272818297 31.0 31.0 34.0 28.0 34.0 4 35.393007403461525 37.0 35.0 37.0 33.0 37.0 5 35.014801990697585 35.0 35.0 37.0 32.0 37.0 6 35.02867916524862 36.0 35.0 37.0 32.0 37.0 7 32.62164168429983 35.0 35.0 37.0 26.0 37.0 8 34.09601564542302 37.0 35.0 37.0 28.0 37.0 9 34.27278130441002 38.0 35.0 39.0 27.0 39.0 10 34.83010757461417 37.0 34.0 39.0 27.0 39.0 11 35.71618009006476 37.0 35.0 39.0 30.0 39.0 12 35.7897806582718 37.0 35.0 39.0 31.0 39.0 13 35.57398035937123 37.0 35.0 39.0 30.0 39.0 14 36.6428532674371 38.0 35.0 40.0 31.0 41.0 15 36.764887073783065 38.0 35.0 40.0 31.0 41.0 16 36.8265069570836 38.0 35.0 40.0 31.0 41.0 17 36.82477570125726 38.0 35.0 40.0 32.0 41.0 18 36.68567348811057 38.0 35.0 40.0 31.0 41.0 19 36.66615370197738 38.0 35.0 40.0 31.0 41.0 20 36.57363262850012 38.0 35.0 40.0 31.0 41.0 21 36.631674089857604 38.0 35.0 40.0 31.0 41.0 22 36.60287161578945 38.0 35.0 40.0 31.0 41.0 23 36.55199932920002 38.0 35.0 40.0 31.0 41.0 24 36.22362794276498 38.0 35.0 40.0 30.0 41.0 25 36.33264280394391 38.0 35.0 40.0 30.0 41.0 26 36.234123989484225 38.0 35.0 40.0 30.0 41.0 27 36.1096141420419 38.0 35.0 40.0 30.0 41.0 28 36.05230513507248 38.0 35.0 40.0 30.0 41.0 29 35.75139955510178 38.0 34.0 40.0 29.0 41.0 30 35.794493521354624 38.0 34.0 40.0 29.0 41.0 31 35.60559674070128 38.0 34.0 40.0 29.0 41.0 32 35.51834341999477 38.0 34.0 40.0 29.0 41.0 33 35.49798266771233 38.0 34.0 40.0 29.0 41.0 34 35.427006111185094 38.0 34.0 40.0 28.0 41.0 35 35.33715097438629 38.0 34.0 40.0 27.0 41.0 36 35.17828728982012 38.0 34.0 40.0 27.0 41.0 37 35.007881899744994 37.0 34.0 40.0 26.0 41.0 38 34.8924500475972 37.0 33.0 40.0 26.0 41.0 39 34.90674647213467 37.0 33.0 40.0 26.0 41.0 40 34.79340347138989 37.0 33.0 40.0 26.0 41.0 41 34.72453056332401 37.0 33.0 40.0 26.0 41.0 42 34.67411945171966 37.0 33.0 40.0 26.0 41.0 43 34.64149933659855 37.0 33.0 40.0 26.0 41.0 44 34.47624578900381 37.0 33.0 40.0 25.0 41.0 45 34.294431866944855 37.0 33.0 40.0 24.0 41.0 46 34.25309135210587 37.0 33.0 40.0 24.0 41.0 47 34.18652925131817 36.0 33.0 40.0 24.0 41.0 48 34.07605441371589 36.0 33.0 40.0 23.0 41.0 49 33.91012513379007 36.0 33.0 39.0 23.0 41.0 50 33.652212406840185 36.0 32.0 39.0 23.0 40.0 51 31.722412117804314 35.0 29.0 38.0 18.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 9.0 10 4.0 11 6.0 12 12.0 13 14.0 14 32.0 15 48.0 16 86.0 17 152.0 18 340.0 19 606.0 20 962.0 21 1495.0 22 2206.0 23 2855.0 24 3491.0 25 4061.0 26 4893.0 27 5860.0 28 7343.0 29 9054.0 30 11582.0 31 15006.0 32 19518.0 33 26764.0 34 40008.0 35 44360.0 36 47167.0 37 60979.0 38 63603.0 39 32970.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 20.730678741066278 32.99374084432015 20.35631316494281 25.919267249670764 2 23.139886457238966 31.667677798986894 20.4897333076851 24.702702436089037 3 20.556813305514865 33.16612657403708 19.716833626808324 26.560226493639732 4 20.848561972546527 33.454422594121624 18.885238947830505 26.811776485501348 5 17.229201501408188 36.07202221531693 18.16289588296513 28.535880400309754 6 19.826085240920772 38.02991965197319 20.015487587734228 22.128507519371816 7 75.87635578047085 13.959051607207154 5.502532763153352 4.662059849168652 8 83.55208317919731 6.489989790029742 4.852695284177506 5.105231746595443 9 72.62642853267437 14.303329831362857 8.43333678598028 4.63690484998249 10 39.69557518631962 30.20178255229527 12.199434752371229 17.903207509013875 11 30.699703565597826 26.487720907750205 25.362897855906247 17.44967767074572 12 30.409434604400644 22.851837054793506 28.980038768292864 17.758689572512985 13 24.84746699022901 30.76259106356323 25.610995200820742 18.778946745387017 14 18.499035725031195 34.71414549454235 27.926734831782106 18.860083948644345 15 16.684176519041348 30.82794473791943 32.51530262450492 19.972576118534302 16 17.67730575161658 26.83249236718407 32.11553543155621 23.374666449643144 17 17.899754862066754 26.334571353881515 27.33855176257627 28.427122021475466 18 20.10969552586279 27.01893530232856 28.567447458111992 24.30392171369665 19 22.673039266460492 31.39393221960807 24.85239934301061 21.08062917092082 20 24.069881574209713 29.01851111998935 24.408980827944738 22.502626477856204 21 21.18396196169535 30.665423713765705 25.243781536230596 22.90683278830835 22 19.629530982573996 28.19801423477013 25.0252783080057 27.147176474650177 23 20.46211213210814 31.827239411471663 22.7260620588627 24.9845863975575 24 18.84010791987886 30.22693755148143 27.994554682529117 22.938399846110595 25 19.048006589623316 27.923282184834985 27.692694692295174 25.336016533246525 26 22.56551397582161 30.63114386193358 23.702667909619567 23.100674252625243 27 19.454432458827185 30.360850929501883 25.69015946296543 24.494557148705503 28 19.541241867783352 29.181525379421235 28.424902462723743 22.852330290071666 29 21.59630665423714 30.45456563235229 25.648974317239066 22.300153396171506 30 22.45922177337812 29.543806691229786 24.347573035813813 23.649398499578282 31 25.623819318052902 30.3630704882536 20.46211213210814 23.550998061585357 32 26.081295038546337 30.20523519924239 21.693720621673744 22.019749140537527 33 24.17346098262332 28.12131614901624 22.225428251530264 25.479794616830176 34 20.714895212165153 30.549513423398096 21.95291576034684 26.782675604089906 35 21.679910033885264 28.668807307773882 24.459290826317062 25.191991832023792 36 27.51562322743572 27.743991161223814 24.01537907597303 20.725006535367434 37 21.797300030087353 33.19399436725312 22.06389369793285 22.944811904726674 38 21.191113873228666 33.00903113794311 23.591936589672642 22.20791839915558 39 20.819707708774164 29.579319631257306 23.918211726175503 25.68276093379303 40 22.88315749495667 28.764741569376007 22.421489274598876 25.930611661068447 41 20.099584202660512 26.892913688758675 27.13681853380881 25.870683574772002 42 23.085383959002286 27.154821621461657 23.46295556443379 26.296838855102273 43 20.550154629259705 26.891433982924195 26.456400467587045 26.102010920229056 44 22.218522957636022 25.424059030398087 26.339503706663116 26.017914305302774 45 23.01805734353344 29.389670666804772 24.787538903932564 22.80473308572922 46 21.48927459887641 28.191108940875885 27.626601165021725 22.693015295225976 47 22.380304128872513 26.97232456854244 24.30022244911045 26.347148853474593 48 21.697913121538104 25.68350078671027 30.118919025564384 22.499667066187243 49 22.152922665640737 25.080274041520546 27.952876301524594 24.813926991314126 50 20.96200608652333 26.324706648318312 26.18857371154614 26.524713553612205 51 21.06188623035074 26.360712823624 28.148937324593206 24.42846362143206 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 3861.0 1 3046.5 2 2232.0 3 1575.0 4 918.0 5 851.0 6 784.0 7 836.0 8 888.0 9 965.5 10 1043.0 11 1162.0 12 1281.0 13 1330.0 14 1379.0 15 1378.5 16 1378.0 17 1238.5 18 1099.0 19 1060.5 20 1022.0 21 1039.0 22 1056.0 23 1186.5 24 1317.0 25 1314.0 26 1726.5 27 2142.0 28 2810.0 29 3478.0 30 3900.0 31 4322.0 32 4972.0 33 5622.0 34 6892.5 35 8163.0 36 9640.0 37 11117.0 38 11807.5 39 12498.0 40 14536.5 41 16575.0 42 20863.0 43 25151.0 44 29826.5 45 34502.0 46 37547.0 47 40592.0 48 42469.5 49 44347.0 50 41614.5 51 38882.0 52 34263.0 53 29644.0 54 26481.0 55 23318.0 56 21742.5 57 20167.0 58 17804.5 59 15442.0 60 14183.0 61 12924.0 62 11574.5 63 10225.0 64 8879.5 65 7534.0 66 6807.5 67 6081.0 68 4949.5 69 3818.0 70 3299.0 71 2780.0 72 2440.5 73 2101.0 74 1880.5 75 1444.0 76 1228.0 77 1002.0 78 776.0 79 515.5 80 255.0 81 220.0 82 185.0 83 205.5 84 226.0 85 152.0 86 78.0 87 58.0 88 38.0 89 33.0 90 28.0 91 18.0 92 8.0 93 6.0 94 4.0 95 4.0 96 4.0 97 2.5 98 1.0 99 1.0 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 405486.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 37.82483380054259 #Duplication Level Percentage of deduplicated Percentage of total 1 77.99742997376362 29.50239825627068 2 9.27323648323327 7.015172575428527 3 3.567077777034971 4.0477237220987 4 1.8985746767105263 2.872530864179781 5 1.1250979449874652 2.127832138924144 6 0.7949048769358498 1.8040286914403565 7 0.5012054290170511 1.3270608436749722 8 0.38945170036201476 1.1784756671625536 9 0.288006869955867 0.9804430790545637 >10 3.638847362729827 31.987473429919998 >50 0.4765531524153718 11.456344240446645 >100 0.04308562747865005 2.8356896555153304 >500 0.005222500300442431 1.432660343199229 >1k 0.0013056250751106078 1.4321664926845104 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 3283 0.8096457090996977 No Hit CTGTCTCTTATACACATCTGACGCCGGAACAATCGTATGCCGTCTTCTGCT 2517 0.6207365975644042 No Hit AATCTGTCTCTTATACACATCTGACGCCGGAACAATCGTATGCCGTCTTCT 918 0.2263949926754561 No Hit AAACTGTCTCTTATACACATCTGACGCCGGAACAATCGTATGCCGTCTTCT 858 0.21159793433065507 No Hit CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 797 0.196554258346774 No Hit AATGATACCTGTCTCTTATACACATCTGACGCCGGAACAATCGTATGCCGT 773 0.19063543500885358 No Hit AATGATACGGCTGTCTCTTATACACATCTGACGCCGGAACAATCGTATGCC 684 0.16868646513073202 No Hit AAAAACTGTCTCTTATACACATCTGACGCCGGAACAATCGTATGCCGTCTT 647 0.15956161248477135 No Hit GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 612 0.15092999511697075 No Hit TGCAAAGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGG 513 0.126514848848049 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 2.4661763908001756E-4 0.0 0.0 0.7901629156123763 0.0 2 2.4661763908001756E-4 0.0 0.0 1.0468918778946745 0.0 3 2.4661763908001756E-4 0.0 0.0 1.3704542203676575 0.0 4 2.4661763908001756E-4 0.0 0.0 2.9996103441302537 0.0 5 2.4661763908001756E-4 0.0 0.0 3.2716296000355127 0.0 6 2.4661763908001756E-4 0.0 0.0 4.656634261108891 0.0 7 2.4661763908001756E-4 0.0 0.0 5.776031724893091 0.0 8 2.4661763908001756E-4 0.0 0.0 6.643385961537513 0.0 9 2.4661763908001756E-4 0.0 0.0 7.886832097778962 0.0 10 2.4661763908001756E-4 0.0 0.0 9.701937921407891 0.0 11 2.4661763908001756E-4 0.0 0.0 11.437139629974894 0.0 12 2.4661763908001756E-4 0.0 0.0 12.34839180637556 0.0 13 2.4661763908001756E-4 0.0 0.0 12.76566885169895 0.0 14 2.4661763908001756E-4 0.0 0.0 13.145213398243095 0.0 15 2.4661763908001756E-4 0.0 0.0 13.438441771109236 0.0 16 2.4661763908001756E-4 0.0 0.0 14.03772263407368 0.0 17 2.4661763908001756E-4 0.0 0.0 14.768943933945932 0.0 18 2.4661763908001756E-4 0.0 0.0 15.799312430022244 0.0 19 2.4661763908001756E-4 0.0 0.0 16.208697710895073 0.0 20 2.4661763908001756E-4 0.0 0.0 16.628687550248344 0.0 21 2.4661763908001756E-4 0.0 0.0 17.076051947539497 0.0 22 2.4661763908001756E-4 0.0 0.0 17.55301046152025 0.0 23 2.4661763908001756E-4 0.0 0.0 18.12343706071233 0.0 24 2.4661763908001756E-4 0.0 0.0 18.515065871571398 0.0 25 2.4661763908001756E-4 0.0 0.0 18.894610418115544 0.0 26 2.4661763908001756E-4 0.0 0.0 19.23962849518849 0.0 27 2.4661763908001756E-4 0.0 0.0 19.596484218937274 0.0 28 2.4661763908001756E-4 0.0 0.0 19.93952935489758 0.0 29 2.4661763908001756E-4 0.0 0.0 20.322033313110687 0.0 30 2.4661763908001756E-4 0.0 0.0 20.845355943238484 0.0 31 2.4661763908001756E-4 0.0 0.0 21.190374020311427 0.0 32 2.4661763908001756E-4 0.0 0.0 21.549449302811933 0.0 33 2.4661763908001756E-4 0.0 0.0 21.90704487947796 0.0 34 2.4661763908001756E-4 0.0 0.0 22.23553957473254 0.0 35 2.4661763908001756E-4 0.0 0.0 22.641472208658254 0.0 36 2.4661763908001756E-4 0.0 0.0 22.997341461850716 0.0 37 2.4661763908001756E-4 0.0 0.0 23.3172045397375 0.0 38 2.4661763908001756E-4 0.0 0.0 23.663948940284005 0.0 39 2.4661763908001756E-4 0.0 0.0 24.00058201762823 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TTGATCG 20 7.0278783E-4 45.000004 11 CTAGACG 20 7.0278783E-4 45.000004 1 TACCACG 20 7.0278783E-4 45.000004 1 CATGCGT 20 7.0278783E-4 45.000004 2 ACCGATT 20 7.0278783E-4 45.000004 42 CGCGACG 20 7.0278783E-4 45.000004 1 TAACGCG 20 7.0278783E-4 45.000004 1 CCGCTAT 20 7.0278783E-4 45.000004 23 ATATCAC 20 7.0278783E-4 45.000004 30 CGCTATA 20 7.0278783E-4 45.000004 24 CGGATCG 20 7.0278783E-4 45.000004 1 CCTCATA 20 7.0278783E-4 45.000004 39 ACGCTAG 20 7.0278783E-4 45.000004 1 CGTACAG 20 7.0278783E-4 45.000004 1 GGTTGAC 20 7.0278783E-4 45.000004 26 CGGTAGA 20 7.0278783E-4 45.000004 25 CCTATAT 20 7.0278783E-4 45.000004 29 TATCGCG 20 7.0278783E-4 45.000004 1 TAATGCG 20 7.0278783E-4 45.000004 1 ATTTACG 25 3.886324E-5 45.0 1 >>END_MODULE