SRR3553564_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3553564_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	258549
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2259	0.8737221957926737	No Hit
CTGTCTCTTATACACATCTGACGCGTCTGGTATCGTATGCCGTCTTCTGCT	1022	0.39528290575480857	Illumina Paired End PCR Primer 2 (95% over 21bp)
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	536	0.20731079988706202	No Hit
AAACTGTCTCTTATACACATCTGACGCGTCTGGTATCGTATGCCGTCTTCT	531	0.20537693048513048	No Hit
AAAAACTGTCTCTTATACACATCTGACGCGTCTGGTATCGTATGCCGTCTT	458	0.17714243721692985	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	408	0.1578037431976144	No Hit
TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	272	0.10520249546507625	No Hit
AAAAAACTGTCTCTTATACACATCTGACGCGTCTGGTATCGTATGCCGTCT	262	0.10133475666121315	No Hit
AATCTGTCTCTTATACACATCTGACGCGTCTGGTATCGTATGCCGTCTTCT	260	0.10056120890044053	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCGTTGA	35	1.207045E-7	45.000004	24
GGTACCT	70	0.0	45.000004	8
AATCACG	20	7.023131E-4	45.000004	1
TTTACGG	20	7.023131E-4	45.000004	2
CCCTATC	20	7.023131E-4	45.000004	45
GCGCGAC	20	7.023131E-4	45.000004	9
CGTTGAT	35	1.207045E-7	45.000004	25
CGACAAT	20	7.023131E-4	45.000004	20
CCATGCG	20	7.023131E-4	45.000004	1
AGACGTC	20	7.023131E-4	45.000004	26
AATGCCG	20	7.023131E-4	45.000004	1
AATGCAG	40	6.7793735E-9	45.000004	1
ACTACGG	35	1.207045E-7	45.000004	2
CGAATGG	70	0.0	45.000004	2
ACGTCTT	20	7.023131E-4	45.000004	28
AGTTACG	20	7.023131E-4	45.000004	1
CCAACGG	35	1.207045E-7	45.000004	2
TACAGAT	20	7.023131E-4	45.000004	15
TCGACAA	20	7.023131E-4	45.000004	19
ATCGCGG	20	7.023131E-4	45.000004	2