SRR3553563_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3553563_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	301900
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2745	0.9092414706856575	No Hit
CTGTCTCTTATACACATCTGACGCGTCTGGTATCGTATGCCGTCTTCTGCT	1073	0.35541570056310035	Illumina Paired End PCR Primer 2 (95% over 21bp)
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	621	0.20569725074527986	No Hit
AAACTGTCTCTTATACACATCTGACGCGTCTGGTATCGTATGCCGTCTTCT	580	0.19211659489897318	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	507	0.16793640278237829	No Hit
AAAAACTGTCTCTTATACACATCTGACGCGTCTGGTATCGTATGCCGTCTT	427	0.14143756210665784	No Hit
TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	378	0.12520702219277907	No Hit
ACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATACA	326	0.10798277575356079	No Hit
AATCTGTCTCTTATACACATCTGACGCGTCTGGTATCGTATGCCGTCTTCT	307	0.10168930109307718	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ATTACGG	40	6.7866495E-9	45.000004	2
TTGTCCG	25	3.88395E-5	45.000004	25
ATAGATC	20	7.0250145E-4	45.000004	16
CGATTAC	20	7.0250145E-4	45.000004	38
CGACAGT	20	7.0250145E-4	45.000004	32
TATGCGG	50	2.1827873E-11	45.000004	2
TCTAGCG	20	7.0250145E-4	45.000004	1
GCTTCTA	25	3.88395E-5	45.000004	22
CTACGCG	20	7.0250145E-4	45.000004	1
CGCTAAG	25	3.88395E-5	45.000004	1
GCGATGT	25	3.88395E-5	45.000004	9
ACTCGCG	20	7.0250145E-4	45.000004	1
CGTACAG	25	3.88395E-5	45.000004	1
CGGCTCG	25	3.88395E-5	45.000004	1
AACTCGC	20	7.0250145E-4	45.000004	41
TCATACG	20	7.0250145E-4	45.000004	1
CGCACGG	25	3.88395E-5	45.000004	2
CGATCGT	25	3.88395E-5	45.000004	27
TAGTACG	20	7.0250145E-4	45.000004	1
TTTACGG	35	1.2079545E-7	45.0	2