##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3553562_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 240347 Sequences flagged as poor quality 0 Sequence length 51 %GC 46 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 30.98539611478404 31.0 31.0 33.0 28.0 34.0 2 31.16920951790536 31.0 31.0 34.0 28.0 34.0 3 31.31370476852218 31.0 31.0 34.0 28.0 34.0 4 35.23345829155346 35.0 35.0 37.0 33.0 37.0 5 34.78434929497768 35.0 35.0 37.0 32.0 37.0 6 34.818566489284244 35.0 35.0 37.0 32.0 37.0 7 33.582075083109004 35.0 35.0 37.0 29.0 37.0 8 34.3544208997824 35.0 35.0 37.0 30.0 37.0 9 35.80952123388268 38.0 35.0 39.0 32.0 39.0 10 35.562440970763106 37.0 35.0 39.0 30.0 39.0 11 35.995518978809805 37.0 35.0 39.0 31.0 39.0 12 35.4975181716435 37.0 35.0 39.0 30.0 39.0 13 35.556216636779325 37.0 35.0 39.0 30.0 39.0 14 36.4298160576167 38.0 35.0 40.0 31.0 41.0 15 36.66679009931474 38.0 35.0 40.0 31.0 41.0 16 36.49736838820539 38.0 35.0 40.0 31.0 41.0 17 36.42067510724078 38.0 35.0 40.0 30.0 41.0 18 36.06172325845548 38.0 35.0 40.0 30.0 41.0 19 36.028454692590294 38.0 34.0 40.0 29.0 41.0 20 36.2611640669532 38.0 34.0 40.0 30.0 41.0 21 36.47152658447994 38.0 35.0 40.0 31.0 41.0 22 36.42621709445094 38.0 35.0 40.0 31.0 41.0 23 36.39487074937486 38.0 35.0 40.0 31.0 41.0 24 36.06171909780443 38.0 34.0 40.0 30.0 41.0 25 36.07256175446334 38.0 34.0 40.0 30.0 41.0 26 36.02383220926411 38.0 34.0 40.0 30.0 41.0 27 35.937394683520075 38.0 34.0 40.0 30.0 41.0 28 35.79378981222982 38.0 34.0 40.0 29.0 41.0 29 35.59456535758716 38.0 34.0 40.0 29.0 41.0 30 35.738798487187275 38.0 34.0 40.0 29.0 41.0 31 35.416697524828685 38.0 34.0 40.0 28.0 41.0 32 35.233649681502165 37.0 34.0 40.0 27.0 41.0 33 35.42445297840206 38.0 34.0 40.0 28.0 41.0 34 35.30636538005467 38.0 34.0 40.0 28.0 41.0 35 35.233957569680506 37.0 34.0 40.0 27.0 41.0 36 35.06855088684277 37.0 34.0 40.0 27.0 41.0 37 35.083458499586015 37.0 34.0 40.0 27.0 41.0 38 34.931482398365695 37.0 34.0 40.0 27.0 41.0 39 34.749761802726894 37.0 33.0 40.0 26.0 41.0 40 34.47775091846372 37.0 33.0 40.0 25.0 41.0 41 34.660827886347654 37.0 33.0 40.0 25.0 41.0 42 34.52784931786126 37.0 33.0 40.0 24.0 41.0 43 34.70046224833262 37.0 33.0 40.0 26.0 41.0 44 34.66195542278456 37.0 33.0 40.0 26.0 41.0 45 34.39795379180934 37.0 33.0 40.0 24.0 40.0 46 34.25991587163559 37.0 33.0 39.0 24.0 40.0 47 34.10995352552767 36.0 33.0 39.0 23.0 40.0 48 33.98838762289523 36.0 33.0 39.0 23.0 40.0 49 33.79894485889152 36.0 33.0 39.0 23.0 40.0 50 33.658185872925394 36.0 33.0 39.0 23.0 40.0 51 31.22975115146018 34.0 28.0 38.0 13.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 1.0 9 1.0 10 3.0 11 4.0 12 6.0 13 5.0 14 6.0 15 21.0 16 43.0 17 98.0 18 188.0 19 363.0 20 623.0 21 950.0 22 1350.0 23 1652.0 24 1917.0 25 2328.0 26 2694.0 27 3406.0 28 4144.0 29 5509.0 30 7228.0 31 9604.0 32 12443.0 33 16940.0 34 24773.0 35 26500.0 36 27866.0 37 34215.0 38 36866.0 39 18600.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 18.319762676463615 43.60819981110644 16.582274794359822 21.489762718070125 2 19.48599316821096 43.32818799485744 17.264621567982957 19.921197268948646 3 17.85460188810345 28.10769429200281 31.484062626119737 22.553641193774002 4 27.86596046549364 28.59407440076223 17.358236216803206 26.181728916940923 5 13.981451817580414 42.48815254611041 18.38009211681444 25.15030351949473 6 20.504104482269387 32.91574265541072 28.07191269289818 18.50824016942171 7 64.33905977607375 19.928270375748397 9.377275356047713 6.355394492130129 8 68.87874614619696 6.6861662512950035 6.647056131343433 17.788031471164608 9 68.56212060063159 9.84742892567829 12.884288133407114 8.706162340283008 10 36.5030559982026 27.920464994362316 15.672340407827019 19.904138599608068 11 29.183638655776857 24.710106637486636 24.985541737571097 21.120712969165414 12 26.410564725168197 22.242008429479046 36.45936916208649 14.888057683266279 13 25.39120521579217 31.772395744486097 21.508069582728307 21.32832945699343 14 15.718523634578338 32.51632015377766 35.897681269165 15.867474942479 15 13.394383953200997 31.674204379501305 27.929202361585542 27.00220930571216 16 15.084440413235864 26.824549505506624 35.11755919566294 22.97345088559458 17 13.908640424053557 26.394338186039352 29.943373539091393 29.753647850815696 18 16.976704514722464 28.97851855858405 27.34255056231199 26.7022263643815 19 18.965495720770388 31.828980598884115 30.914469496186765 18.291054184158735 20 20.79368579595335 34.253808035881455 23.62334458096003 21.329161587205167 21 17.563356313996014 27.987035411301157 27.595102081573724 26.8545061931291 22 17.699409603614775 32.59870104473948 25.661231469500343 24.040657882145396 23 22.387631216532764 27.618817792608187 20.821146092940623 29.172404897918426 24 14.722047706025037 39.20248640507267 23.872983644480687 22.202482244421606 25 17.612035931382543 25.190245769658038 28.330705188747935 28.867013110211488 26 21.893345870761856 33.325566784690466 19.803450843988067 24.97763650055961 27 14.732449333671733 27.142007181283727 30.481761786084288 27.64378169896025 28 19.343698902004185 27.9891157368305 30.341547845406847 22.325637515758466 29 16.423753989024203 38.159411184662176 25.352927226052337 20.063907600261288 30 20.43254128406013 25.81184703782448 23.424881525461107 30.33073015265429 31 25.71781632389836 36.220963856424255 19.110702442718235 18.950517376959148 32 19.46976662908212 29.887204749799253 20.86524899416261 29.777779626956026 33 22.454617698577472 26.069391338356624 25.681618659687867 25.794372303378033 34 20.49786350568137 31.556874019646596 21.476448634682356 26.46881383998968 35 17.68318306448593 24.301114638418618 31.75325674961618 26.262445547479267 36 22.67263581405218 31.906784773681384 26.2607812870558 19.159798125210635 37 18.509488364739315 31.788206218509075 20.437118000224675 29.26518741652694 38 21.428185082401694 30.613238359538503 24.607338556337297 23.35123800172251 39 23.1964617823397 28.35816548573521 25.040462331545637 23.40491040037945 40 20.703815733085914 26.879470099481168 25.259728642337954 27.156985525094967 41 23.08121174801433 20.963440359147402 33.278967492833274 22.67638040000499 42 24.503322279870353 22.874843455503918 26.309044839336458 26.312789425289267 43 21.11988083895368 23.926239978031763 27.645445959383725 27.308433223630836 44 19.746865989590052 21.5559170699031 26.66686083038274 32.03035611012412 45 27.237286090527448 28.746770294615704 23.203118824033584 20.812824790823267 46 18.45456777076477 23.006736094064 37.67802385717317 20.86067227799806 47 23.99530678560581 26.661868049112325 21.789329594294916 27.553495570986946 48 19.042051700250052 21.493091238917067 35.11797526076881 24.346881800064075 49 23.194381456810362 19.746865989590052 30.916133756610236 26.142618796989353 50 22.135911827482765 21.15691063337591 25.29342991591324 31.413747623228083 51 18.524882773656422 21.012952106745665 35.06471892721773 25.397446192380187 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 2924.0 1 2291.0 2 1658.0 3 1108.5 4 559.0 5 523.5 6 488.0 7 513.5 8 539.0 9 574.0 10 609.0 11 621.5 12 634.0 13 646.5 14 659.0 15 683.5 16 708.0 17 728.0 18 748.0 19 702.0 20 656.0 21 669.5 22 683.0 23 695.5 24 708.0 25 794.5 26 1026.0 27 1171.0 28 1374.5 29 1578.0 30 2082.0 31 2586.0 32 2743.0 33 2900.0 34 3237.0 35 3574.0 36 3917.0 37 4260.0 38 4823.5 39 5387.0 40 7448.5 41 9510.0 42 23117.0 43 36724.0 44 34898.5 45 33073.0 46 29299.0 47 25525.0 48 22230.5 49 18936.0 50 17579.5 51 16223.0 52 14863.5 53 13504.0 54 12171.5 55 10839.0 56 9958.5 57 9078.0 58 8493.5 59 7909.0 60 7356.5 61 6804.0 62 5907.5 63 5011.0 64 4319.0 65 3627.0 66 3183.5 67 2740.0 68 2437.0 69 2134.0 70 1869.5 71 1605.0 72 1374.5 73 1144.0 74 1022.5 75 727.5 76 554.0 77 396.5 78 239.0 79 177.0 80 115.0 81 85.0 82 55.0 83 69.0 84 83.0 85 66.5 86 50.0 87 38.0 88 26.0 89 22.0 90 18.0 91 10.0 92 2.0 93 2.5 94 3.0 95 3.5 96 4.0 97 2.5 98 1.0 99 0.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 240347.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 31.290176286785353 #Duplication Level Percentage of deduplicated Percentage of total 1 79.62635463067616 24.915226734679443 2 8.532677348580545 5.339779568706912 3 2.679343128781331 2.5151135649706466 4 1.3376770161558407 1.6742459860118912 5 0.8869091150854331 1.3875771280690004 6 0.5983644704474437 1.1233757858429687 7 0.4454491057775413 0.9756726732599117 8 0.4281630210757264 1.0717837127153658 9 0.32843560933448573 0.9249127303440442 >10 4.769629678877734 34.25588836141079 >50 0.2752476564058241 5.422992589880464 >100 0.07446313410012632 4.059963303057663 >500 0.006648494116082707 1.4054679276213142 >1k 0.006648494116082707 4.47561234381956 >5k 0.003989096469649624 10.452387589610023 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source AATGATACGGCTGTCTCTTATACACATCTGACGCTACAACGTTCGTATGCC 9042 3.762060687256342 No Hit AATGATACCTGTCTCTTATACACATCTGACGCTACAACGTTCGTATGCCGT 8578 3.5690064781336983 No Hit AATCTGTCTCTTATACACATCTGACGCTACAACGTTCGTATGCCGTCTTCT 7502 3.121320424219982 No Hit CTGTCTCTTATACACATCTGACGCTACAACGTTCGTATGCCGTCTTCTGCT 3618 1.505323553029578 Illumina Single End Adapter 1 (95% over 21bp) AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 2512 1.0451555459398287 No Hit AATGACTGTCTCTTATACACATCTGACGCTACAACGTTCGTATGCCGTCTT 1928 0.8021735241130532 No Hit AATGATCTGTCTCTTATACACATCTGACGCTACAACGTTCGTATGCCGTCT 1490 0.6199370077429717 No Hit AACTGTCTCTTATACACATCTGACGCTACAACGTTCGTATGCCGTCTTCTG 1209 0.5030227129941293 No Hit AATGATACGGCGACTGTCTCTTATACACATCTGACGCTACAACGTTCGTAT 959 0.39900643652718776 No Hit AAACTGTCTCTTATACACATCTGACGCTACAACGTTCGTATGCCGTCTTCT 707 0.2941580298485107 No Hit AATGCTGTCTCTTATACACATCTGACGCTACAACGTTCGTATGCCGTCTTC 602 0.25047119373239524 No Hit CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 601 0.25005512862652746 No Hit AAAAACTGTCTCTTATACACATCTGACGCTACAACGTTCGTATGCCGTCTT 509 0.211777138886693 No Hit GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 436 0.18140438615834606 No Hit TGCAAAGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGG 380 0.15810474022975113 No Hit GCATCGGGGAATGATACGGCTGTCTCTTATACACATCTGACGCTACAACGT 340 0.1414621359950405 No Hit AGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT 306 0.12731592239553646 No Hit TACAAAGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGG 285 0.11857855517231337 No Hit TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 279 0.11608216453710676 No Hit AATGATACGGCCTGTCTCTTATACACATCTGACGCTACAACGTTCGTATGC 272 0.1131697087960324 No Hit AATGATACGGCGCTGTCTCTTATACACATCTGACGCTACAACGTTCGTATG 269 0.11192151347842909 No Hit AATGATACCTGTCTCTTATACACATCTGACGCTACAACGTTCGTATGCCGG 256 0.10651266710214814 No Hit AATGATACGGCGACCTGTCTCTTATACACATCTGACGCTACAACGTTCGTA 250 0.10401627646694156 No Hit AAAAAACTGTCTCTTATACACATCTGACGCTACAACGTTCGTATGCCGTCT 249 0.10360021136107378 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 1.8552343070643695 0.0 2 0.0 0.0 0.0 2.147728076489409 0.0 3 0.0 0.0 0.0 3.1042617548794036 0.0 4 0.0 0.0 0.0 8.180256046466152 0.0 5 0.0 0.0 0.0 8.729461986211602 0.0 6 0.0 0.0 0.0 10.8979933179944 0.0 7 0.0 0.0 0.0 12.535625574689927 0.0 8 0.0 0.0 0.0 13.146825215209676 0.0 9 0.0 0.0 0.0 18.151672373693035 0.0 10 0.0 0.0 0.0 19.523022962633192 0.0 11 0.0 0.0 0.0 25.08206884213242 0.0 12 0.0 0.0 0.0 25.937498699796546 0.0 13 0.0 0.0 0.0 26.475886946789434 0.0 14 0.0 0.0 0.0 27.273067689632075 0.0 15 0.0 0.0 0.0 27.72241800396926 0.0 16 0.0 0.0 0.0 28.35941368105281 0.0 17 0.0 0.0 0.0 28.988088056019006 0.0 18 0.0 0.0 0.0 30.217560443858254 0.0 19 0.0 0.0 0.0 30.554989244717014 0.0 20 0.0 0.0 0.0 31.17034953629544 0.0 21 0.0 0.0 0.0 31.539399285200147 0.0 22 0.0 0.0 0.0 31.91718640132808 0.0 23 0.0 0.0 0.0 32.351558371854026 0.0 24 0.0 0.0 0.0 32.63448264384411 0.0 25 0.0 0.0 0.0 32.85874173590683 0.0 26 0.0 0.0 0.0 33.10172375773361 0.0 27 0.0 0.0 0.0 33.395049657370386 0.0 28 0.0 0.0 0.0 33.66923656213724 0.0 29 0.0 0.0 0.0 33.888918938035424 0.0 30 0.0 0.0 0.0 34.27045064011617 0.0 31 0.0 0.0 0.0 34.51634511768402 0.0 32 0.0 0.0 0.0 34.74684518633476 0.0 33 0.0 0.0 0.0 34.99898064049062 0.0 34 0.0 0.0 0.0 35.2161666257536 0.0 35 0.0 0.0 0.0 35.4807840330855 0.0 36 0.0 0.0 0.0 35.71627688300665 0.0 37 0.0 0.0 0.0 35.9467769516574 0.0 38 0.0 0.0 0.0 36.1880947130607 0.0 39 0.0 0.0 0.0 36.438565906793094 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TTGGCTA 20 7.02214E-4 45.000004 30 TGATACA 20 7.02214E-4 45.000004 3 ATTAGAA 20 7.02214E-4 45.000004 13 TTTACGG 20 7.02214E-4 45.000004 2 CGGCCAC 20 7.02214E-4 45.000004 30 AGCCAAT 20 7.02214E-4 45.000004 35 CACGCTA 20 7.02214E-4 45.000004 18 ACACACG 20 7.02214E-4 45.000004 1 ACTTATG 20 7.02214E-4 45.000004 34 ACGGGCC 35 1.206572E-7 45.000004 5 TAGCATA 20 7.02214E-4 45.000004 30 GTAGCAT 20 7.02214E-4 45.000004 29 ACCTAAA 20 7.02214E-4 45.000004 10 TACGATT 20 7.02214E-4 45.000004 11 CGCTATA 20 7.02214E-4 45.000004 20 AAGCACG 20 7.02214E-4 45.000004 1 GGGCGAT 45 3.8198777E-10 45.000004 7 TCACTTG 20 7.02214E-4 45.000004 31 CATACCG 20 7.02214E-4 45.000004 1 CTACAGG 40 6.7757355E-9 45.000004 2 >>END_MODULE