##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3553557_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 245043 Sequences flagged as poor quality 0 Sequence length 51 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 30.902033520647397 31.0 31.0 33.0 28.0 34.0 2 31.074505290908128 31.0 31.0 34.0 28.0 34.0 3 31.34702072697445 31.0 31.0 34.0 28.0 34.0 4 35.341593108148366 37.0 35.0 37.0 33.0 37.0 5 34.961541443746604 35.0 35.0 37.0 32.0 37.0 6 34.98002391417017 35.0 35.0 37.0 32.0 37.0 7 32.56605167256359 35.0 35.0 37.0 26.0 37.0 8 34.02523230616667 36.0 35.0 37.0 28.0 37.0 9 34.250082638557316 38.0 34.0 39.0 28.0 39.0 10 34.74854617352873 37.0 34.0 39.0 27.0 39.0 11 35.63740649600274 37.0 35.0 39.0 30.0 39.0 12 35.710087617275335 37.0 35.0 39.0 31.0 39.0 13 35.55571471129557 37.0 35.0 39.0 30.0 39.0 14 36.57356055875908 38.0 35.0 40.0 31.0 41.0 15 36.72968825879539 38.0 35.0 40.0 31.0 41.0 16 36.76360067416739 38.0 35.0 40.0 31.0 41.0 17 36.68643462575956 38.0 35.0 40.0 31.0 41.0 18 36.52865823549336 38.0 35.0 40.0 31.0 41.0 19 36.475671616818275 38.0 35.0 40.0 31.0 41.0 20 36.44674608130002 38.0 35.0 40.0 31.0 41.0 21 36.5350693551744 38.0 35.0 40.0 31.0 41.0 22 36.50775578163832 38.0 35.0 40.0 31.0 41.0 23 36.44710520194415 38.0 35.0 40.0 31.0 41.0 24 36.11877915304661 38.0 34.0 40.0 30.0 41.0 25 36.20415192435613 38.0 35.0 40.0 30.0 41.0 26 36.10349204017254 38.0 35.0 40.0 30.0 41.0 27 35.986141207869636 38.0 34.0 40.0 30.0 41.0 28 35.94790302110242 38.0 34.0 40.0 30.0 41.0 29 35.67354301081851 38.0 34.0 40.0 29.0 41.0 30 35.68004799157699 38.0 34.0 40.0 29.0 41.0 31 35.53280036565011 38.0 34.0 40.0 29.0 41.0 32 35.41221744755002 38.0 34.0 40.0 28.0 41.0 33 35.43221801887832 38.0 34.0 40.0 29.0 41.0 34 35.36048775112939 38.0 34.0 40.0 28.0 41.0 35 35.28338291646772 38.0 34.0 40.0 27.0 41.0 36 35.19508820900821 38.0 34.0 40.0 27.0 41.0 37 35.10461429218545 38.0 34.0 40.0 27.0 41.0 38 35.009990083373125 37.0 34.0 40.0 27.0 41.0 39 34.907763127287865 37.0 34.0 40.0 26.0 41.0 40 34.7130013915925 37.0 33.0 40.0 25.0 41.0 41 34.730745216145735 37.0 33.0 40.0 25.0 41.0 42 34.71301771525814 37.0 33.0 40.0 25.0 41.0 43 34.73028815350775 37.0 33.0 40.0 26.0 41.0 44 34.59259395289806 37.0 33.0 40.0 25.0 41.0 45 34.403463881849305 37.0 33.0 40.0 24.0 41.0 46 34.29610313291953 37.0 33.0 40.0 24.0 41.0 47 34.159604640818145 37.0 33.0 40.0 23.0 41.0 48 34.127047089694464 36.0 33.0 40.0 23.0 41.0 49 33.97417188003738 36.0 33.0 40.0 23.0 41.0 50 33.74792587423432 36.0 33.0 39.0 23.0 40.0 51 31.674910117816058 35.0 29.0 38.0 17.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 1.0 9 1.0 10 3.0 11 3.0 12 6.0 13 4.0 14 6.0 15 24.0 16 39.0 17 105.0 18 196.0 19 353.0 20 641.0 21 985.0 22 1325.0 23 1776.0 24 2065.0 25 2470.0 26 2812.0 27 3542.0 28 4276.0 29 5489.0 30 7072.0 31 9144.0 32 11750.0 33 16646.0 34 25143.0 35 27671.0 36 28453.0 37 37456.0 38 38005.0 39 17580.0 40 1.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 20.02464873511996 36.77599441730635 17.718522871496024 25.480833976077665 2 20.861644690931797 36.43768644686851 19.62512701852328 23.07554184367642 3 19.622678468676927 34.458033896091706 21.0563044037169 24.86298323151447 4 19.521471741694317 34.23113494366295 18.65305272952094 27.594340585121795 5 16.079626841003417 38.13453149039148 18.73140632460425 27.05443534400085 6 19.336198136653568 38.372448917128835 21.125679982696916 21.165672963520688 7 73.03167199226259 16.04453095987235 6.30705631256555 4.616740735299519 8 79.80232040907106 7.885962871822497 5.149300326881404 7.162416392225038 9 70.07423186950862 16.321625184151355 9.08575229653571 4.51839064980432 10 35.88921128128533 38.27165028178728 11.775484302755027 14.06365413417237 11 27.836338928269733 27.101773974363685 28.86146513060973 16.200421966756856 12 27.684936929436876 26.189281064955942 29.706214827601684 16.419567178005494 13 22.109588929289963 35.689246377166455 24.50875968707533 17.692405006468253 14 15.841709414266067 37.601971898809595 30.557902082491644 15.998416604432691 15 14.874940316597495 32.397171108744175 32.72160396338602 20.006284611272307 16 17.55038911537975 29.586643976771427 32.666103500202006 20.19686340764682 17 16.50730688083316 29.56991221948801 27.722481360414296 26.200299539264538 18 19.49045677697384 29.341380900495018 26.70061989120277 24.46754243132838 19 19.799790240896495 33.62430267340834 26.80223470982644 19.773672375868724 20 22.842521516631777 32.80811939129051 24.835232999922464 19.514126092155255 21 19.295797064188736 32.468179054288434 25.37554633268447 22.860477548838368 22 19.60717098631669 30.64931461008884 26.009312651248965 23.734201752345506 23 20.174826459029642 32.04049901445868 22.331182690384953 25.45349183612672 24 16.41262962010749 33.98546377574549 27.5694469950172 22.032459609129827 25 18.34086262411087 30.358753361654895 26.758976995874196 24.541407018360044 26 22.050007549695362 35.228919006052 21.319931603840956 21.401141840411682 27 16.384063205233367 33.39740372097958 24.500597854254153 25.7179352195329 28 18.41187056965512 30.87988638728713 28.456638222679288 22.251604820378464 29 20.531090461674072 31.58262019319058 26.547585525805673 21.33870381932967 30 20.420089535306047 30.83907722318124 23.534236848226637 25.206596393286073 31 24.255334777977744 32.624886244455055 22.554816909685236 20.564962067881964 32 22.312002383255184 32.511028676599615 22.049191366413243 23.127777573731958 33 20.75064376456377 32.87790306191158 22.792326244781528 23.57912692874312 34 18.527360504074792 33.618997482074576 23.245716057997985 24.607925955852647 35 18.192725358406484 31.039042127300103 26.36476047061128 24.40347204368213 36 23.31101072056741 30.04125806491106 27.134013214007336 19.513718000514196 37 18.5710263096681 32.33595736258535 25.442881453459187 23.65013487428737 38 19.777345200638255 31.642609664426242 27.450692327469056 21.129352807466447 39 19.015846198422317 32.99053635484384 26.308851915786207 21.68476553094763 40 21.79046126598189 32.07804344543611 23.62442510090066 22.507070187681347 41 19.159086364433996 27.851438318988915 28.72883534726558 24.26063996931151 42 22.975151299975924 27.507417065576245 25.57836787829075 23.939063756157083 43 21.33421481127802 26.647976069506168 27.20910207596218 24.808707043253634 44 21.065690511461256 27.522924547936483 25.452267561203545 25.959117379398716 45 23.03228412972417 30.787657676407814 24.791567194329158 21.388490999538856 46 20.034034842864312 29.546650995947648 28.91247658574209 21.506837575445942 47 20.879600723138388 30.162869373946616 23.719918544908445 25.237611358006557 48 20.94285492750252 26.563501099806974 30.966809906832676 21.526834065857827 49 21.659055757560917 24.458156323584024 29.201813559252866 24.680974359602192 50 19.888346127006283 27.75063968364736 24.09373048811841 28.267283701227946 51 19.075835669657977 27.402129422183048 29.5948058095926 23.927229098566375 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 3828.0 1 2973.5 2 2119.0 3 1395.0 4 671.0 5 606.5 6 542.0 7 577.5 8 613.0 9 651.0 10 689.0 11 746.0 12 803.0 13 822.5 14 842.0 15 816.5 16 791.0 17 801.0 18 811.0 19 876.0 20 941.0 21 964.0 22 987.0 23 999.5 24 1012.0 25 1151.5 26 1385.5 27 1480.0 28 1845.5 29 2211.0 30 3015.0 31 3819.0 32 3882.5 33 3946.0 34 4606.0 35 5266.0 36 5872.0 37 6478.0 38 7528.0 39 8578.0 40 10910.0 41 13242.0 42 19453.5 43 25665.0 44 27066.0 45 28467.0 46 28529.0 47 28591.0 48 25773.5 49 22956.0 50 21029.0 51 19102.0 52 17601.5 53 16101.0 54 14035.0 55 11969.0 56 10304.5 57 8640.0 58 7903.5 59 7167.0 60 6014.0 61 4861.0 62 4179.0 63 3497.0 64 2843.0 65 2189.0 66 1926.0 67 1663.0 68 1349.0 69 1035.0 70 839.5 71 644.0 72 588.0 73 532.0 74 471.5 75 412.5 76 414.0 77 247.0 78 80.0 79 75.5 80 71.0 81 41.5 82 12.0 83 9.0 84 6.0 85 6.5 86 7.0 87 4.0 88 1.0 89 1.5 90 2.0 91 1.0 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 245043.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 40.291295813387855 #Duplication Level Percentage of deduplicated Percentage of total 1 78.977220933648 31.82094571156899 2 9.111626540802789 7.34238480593202 3 3.299875419067973 3.9886876997098466 4 1.7319788111130243 2.7913468248429867 5 1.0381744335619005 2.0914696604269456 6 0.720138558304889 1.7409189407573367 7 0.5216193495457354 1.471170366017393 8 0.4335011293312131 1.397305778985729 9 0.3393057904812065 1.2303962977926324 >10 3.4821889781325015 30.31223091457418 >50 0.29474025382098834 7.3089212913651895 >100 0.041526977342476026 3.276975877703097 >500 0.003038559317742148 0.891272144072673 >1k 0.005064265529570247 4.335973686250984 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 3300 1.3467024154944234 No Hit CTGTCTCTTATACACATCTGACGCCGCTAAATTCGTATGCCGTCTTCTGCT 1998 0.8153670988357146 No Hit AATGATACCTGTCTCTTATACACATCTGACGCCGCTAAATTCGTATGCCGT 1818 0.7419106034451096 No Hit AATCTGTCTCTTATACACATCTGACGCCGCTAAATTCGTATGCCGTCTTCT 1814 0.740278236880874 No Hit AATGATACGGCTGTCTCTTATACACATCTGACGCCGCTAAATTCGTATGCC 1695 0.691715331594863 No Hit CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 781 0.31871957166701353 No Hit AAACTGTCTCTTATACACATCTGACGCCGCTAAATTCGTATGCCGTCTTCT 713 0.29096934007500724 No Hit GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 690 0.2815832323306522 No Hit AAAAACTGTCTCTTATACACATCTGACGCCGCTAAATTCGTATGCCGTCTT 464 0.18935452145133713 No Hit AATGACTGTCTCTTATACACATCTGACGCCGCTAAATTCGTATGCCGTCTT 425 0.17343894745003938 No Hit TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 384 0.15670719016662382 No Hit AATGATCTGTCTCTTATACACATCTGACGCCGCTAAATTCGTATGCCGTCT 348 0.14201589108850282 No Hit AACTGTCTCTTATACACATCTGACGCCGCTAAATTCGTATGCCGTCTTCTG 331 0.13507833319050125 No Hit ACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATACA 323 0.13181360006202994 No Hit TACTAGGGATCTTTGCTTATATTTGACATTGAGCAGTCAGGGGATTTAGGC 304 0.12405985888191051 No Hit AAAAAACTGTCTCTTATACACATCTGACGCCGCTAAATTCGTATGCCGTCT 268 0.10936855980378953 No Hit GATAGAGGGAAAGGATAAAAAGGAAGGAAGGAAGGATGAAGAAAGGAAGAA 267 0.10896046816273061 No Hit AGAAAAGTAGGTTAAGTTGACGGCCGTTATAAAAATCCTTCGACTGGCGCA 263 0.10732810159849496 No Hit CCTGTCTCTTATACACATCTGACGCCGCTAAATTCGTATGCCGTCTTCTGC 250 0.10202291026472905 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 1.0479793342392967 0.0 2 0.0 0.0 0.0 1.349150965340777 0.0 3 0.0 0.0 0.0 1.8441661259452422 0.0 4 0.0 0.0 0.0 4.4029007153846464 0.0 5 0.0 0.0 0.0 4.7693670090555536 0.0 6 0.0 0.0 0.0 6.349089751594618 0.0 7 0.0 0.0 0.0 7.576629407899838 0.0 8 0.0 0.0 0.0 8.25365344041658 0.0 9 0.0 0.0 0.0 10.113327048722061 0.0 10 4.080916410589162E-4 0.0 0.0 11.741204604906077 0.0 11 4.080916410589162E-4 0.0 0.0 14.257905755316413 0.0 12 4.080916410589162E-4 0.0 0.0 15.216513020163807 0.0 13 4.080916410589162E-4 0.0 0.0 15.663373367123322 0.0 14 4.080916410589162E-4 0.0 0.0 16.146961961778135 0.0 15 4.080916410589162E-4 0.0 0.0 16.502409781140454 0.0 16 4.080916410589162E-4 0.0 0.0 17.148418848936718 0.0 17 4.080916410589162E-4 0.0 0.0 18.037242443163038 0.0 18 4.080916410589162E-4 0.0 0.0 19.166840105614117 0.0 19 4.080916410589162E-4 0.0 0.0 19.701848247042356 0.0 20 4.080916410589162E-4 0.0 0.0 20.177275008875995 0.0 21 4.080916410589162E-4 0.0 0.0 20.734320098921415 0.0 22 4.080916410589162E-4 0.0 0.0 21.321563970405194 0.0 23 4.080916410589162E-4 0.0 0.0 21.91125639173533 0.0 24 4.080916410589162E-4 0.0 0.0 22.36178956346437 0.0 25 4.080916410589162E-4 0.0 0.0 22.726215398929984 0.0 26 4.080916410589162E-4 0.0 0.0 23.054729169982412 0.0 27 4.080916410589162E-4 0.0 0.0 23.46200462775921 0.0 28 4.080916410589162E-4 0.0 0.0 23.86805581061283 0.0 29 4.080916410589162E-4 0.0 0.0 24.2716584436201 0.0 30 4.080916410589162E-4 0.0 0.0 24.882571630285298 0.0 31 4.080916410589162E-4 0.0 0.0 25.283317621805153 0.0 32 4.080916410589162E-4 0.0 0.0 25.634276433115822 0.0 33 4.080916410589162E-4 0.0 0.0 26.03012532494297 0.0 34 4.080916410589162E-4 0.0 0.0 26.465151014311775 0.0 35 4.080916410589162E-4 0.0 0.0 26.923846018861994 0.0 36 4.080916410589162E-4 0.0 0.0 27.333978118126208 0.0 37 4.080916410589162E-4 0.0 0.0 27.71676807743947 0.0 38 4.080916410589162E-4 0.0 0.0 28.13832674265333 0.0 39 4.080916410589162E-4 0.0 0.0 28.541929375660597 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TAACGGG 95 0.0 45.000004 3 ATCCGGG 45 3.8198777E-10 45.000004 3 AGTGCGC 45 3.8198777E-10 45.000004 13 CAGGACG 45 3.8198777E-10 45.000004 1 GCTACGG 45 3.8198777E-10 45.000004 2 CTTAATG 40 6.7775545E-9 45.0 45 TCGCCGG 20 7.0224126E-4 45.0 32 CGGGTCA 40 6.7775545E-9 45.0 6 GAGTGCG 20 7.0224126E-4 45.0 40 CGGAACG 20 7.0224126E-4 45.0 1 TTGGCGG 20 7.0224126E-4 45.0 2 AGTCCGG 40 6.7775545E-9 45.0 2 AAATCGC 20 7.0224126E-4 45.0 45 TGCCCCG 20 7.0224126E-4 45.0 1 GCGACGG 50 2.1827873E-11 45.0 2 AATCAGC 20 7.0224126E-4 45.0 23 ACGCATG 25 3.8817932E-5 45.0 1 CTATCGG 35 1.2066994E-7 45.0 2 CGTGCGG 20 7.0224126E-4 45.0 2 CCAGGTG 20 7.0224126E-4 45.0 20 >>END_MODULE