SRR3553555_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3553555_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	431611
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	3644	0.8442787602725602	No Hit
CTGTCTCTTATACACATCTGACGCGCATGATTTCGTATGCCGTCTTCTGCT	3017	0.699009061400196	Illumina PCR Primer Index 5 (95% over 24bp)
AATCTGTCTCTTATACACATCTGACGCGCATGATTTCGTATGCCGTCTTCT	1146	0.2655168658815461	Illumina PCR Primer Index 5 (95% over 21bp)
AATGATACGGCTGTCTCTTATACACATCTGACGCGCATGATTTCGTATGCC	968	0.22427602632926405	No Hit
AATGATACCTGTCTCTTATACACATCTGACGCGCATGATTTCGTATGCCGT	940	0.21778870325362423	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	805	0.18651053842464627	No Hit
AAACTGTCTCTTATACACATCTGACGCGCATGATTTCGTATGCCGTCTTCT	794	0.18396194721635917	Illumina PCR Primer Index 5 (95% over 21bp)
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	735	0.17029223073554658	No Hit
AAAAACTGTCTCTTATACACATCTGACGCGCATGATTTCGTATGCCGTCTT	580	0.13438026370968303	No Hit
TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	445	0.1031020988807051	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CAGCGCG	35	1.2095734E-7	45.000004	1
GCGGCTA	35	1.2095734E-7	45.000004	23
CCGAACG	35	1.2095734E-7	45.000004	1
TGGGACG	35	1.2095734E-7	45.000004	6
GTGCGAC	35	1.2095734E-7	45.000004	45
GACTACG	35	1.2095734E-7	45.000004	1
CGGGTAT	25	3.8867445E-5	45.0	6
AAGTACG	20	7.0283865E-4	45.0	1
ACAGTCG	20	7.0283865E-4	45.0	1
CGTATAT	20	7.0283865E-4	45.0	39
CAACGGA	20	7.0283865E-4	45.0	3
CGCGGAG	25	3.8867445E-5	45.0	4
ACGTTAG	20	7.0283865E-4	45.0	1
CGTGAGT	20	7.0283865E-4	45.0	32
ATTGTCG	20	7.0283865E-4	45.0	34
ATGCTCG	20	7.0283865E-4	45.0	1
TTCAACG	20	7.0283865E-4	45.0	1
ATATGCG	20	7.0283865E-4	45.0	1
TATGCGA	25	3.8867445E-5	45.0	11
ACCCTAC	20	7.0283865E-4	45.0	22