SRR3553547_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3553547_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	594643
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTGTCTCTTATACACATCTGACGCTGTGTAGGTCGTATGCCGTCTTCTGCT	6899	1.1601919134674081	Illumina Single End Adapter 2 (95% over 22bp)
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1693	0.28470864031023657	No Hit
CCTGTCTCTTATACACATCTGACGCTGTGTAGGTCGTATGCCGTCTTCTGC	1467	0.2467026434348004	Illumina Single End Adapter 2 (95% over 21bp)
AAACTGTCTCTTATACACATCTGACGCTGTGTAGGTCGTATGCCGTCTTCT	1177	0.1979338863822495	No Hit
AAAAACTGTCTCTTATACACATCTGACGCTGTGTAGGTCGTATGCCGTCTT	761	0.12797594523100414	No Hit
ACCTGTCTCTTATACACATCTGACGCTGTGTAGGTCGTATGCCGTCTTCTG	619	0.10409607108803097	No Hit
AACCTGTCTCTTATACACATCTGACGCTGTGTAGGTCGTATGCCGTCTTCT	618	0.10392790296026357	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGGGTTA	25	3.8885257E-5	45.000004	6
TTCTACG	95	0.0	45.000004	1
CTCGTAA	25	3.8885257E-5	45.000004	31
CGTATAA	25	3.8885257E-5	45.000004	36
TACCACG	25	3.8885257E-5	45.000004	1
CGTGAAC	25	3.8885257E-5	45.000004	34
CGCGCCG	25	3.8885257E-5	45.000004	19
CACGACC	105	0.0	45.000004	27
CCGTCGG	25	3.8885257E-5	45.000004	1
AGCGGAT	55	1.8189894E-12	45.000004	4
GCCGAAA	25	3.8885257E-5	45.000004	44
CGAATCC	25	3.8885257E-5	45.000004	24
CGAATAG	25	3.8885257E-5	45.000004	24
TCATCGT	25	3.8885257E-5	45.000004	38
CATCGCG	25	3.8885257E-5	45.000004	1
CGTAAAC	25	3.8885257E-5	45.000004	20
TCATACG	25	3.8885257E-5	45.000004	1
GCGTATA	25	3.8885257E-5	45.000004	35
ACGAATC	25	3.8885257E-5	45.000004	23
ACGCGTA	25	3.8885257E-5	45.000004	33