##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3553546_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 984770 Sequences flagged as poor quality 0 Sequence length 51 %GC 47 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.963510261279282 33.0 31.0 34.0 30.0 34.0 2 32.1626816413985 34.0 31.0 34.0 30.0 34.0 3 32.30489251297257 34.0 31.0 34.0 30.0 34.0 4 35.915973272946985 37.0 35.0 37.0 35.0 37.0 5 35.732285711384385 37.0 35.0 37.0 35.0 37.0 6 35.73771337469663 37.0 35.0 37.0 33.0 37.0 7 35.867152736171896 37.0 35.0 37.0 35.0 37.0 8 36.02979071255217 37.0 35.0 37.0 35.0 37.0 9 37.634700488438924 39.0 37.0 39.0 35.0 39.0 10 37.18320318449993 39.0 37.0 39.0 34.0 39.0 11 37.12485758095799 39.0 37.0 39.0 34.0 39.0 12 37.08500462036821 39.0 37.0 39.0 33.0 39.0 13 37.079106796510864 39.0 37.0 39.0 33.0 39.0 14 38.281951115488894 40.0 38.0 41.0 34.0 41.0 15 38.25935599175442 40.0 38.0 41.0 33.0 41.0 16 38.18716959289986 40.0 37.0 41.0 33.0 41.0 17 38.202112168323566 40.0 37.0 41.0 33.0 41.0 18 38.17029154015658 40.0 37.0 41.0 33.0 41.0 19 38.173664916681055 40.0 37.0 41.0 34.0 41.0 20 38.118727215491944 40.0 37.0 41.0 33.0 41.0 21 38.063643287265045 40.0 37.0 41.0 33.0 41.0 22 38.05706713242686 40.0 37.0 41.0 33.0 41.0 23 37.96395198878926 40.0 37.0 41.0 33.0 41.0 24 37.91630025285092 40.0 37.0 41.0 33.0 41.0 25 37.920975456197894 40.0 37.0 41.0 33.0 41.0 26 37.86255064634381 40.0 37.0 41.0 33.0 41.0 27 37.84165135006143 40.0 37.0 41.0 33.0 41.0 28 37.79666318023498 40.0 37.0 41.0 33.0 41.0 29 37.67758562913168 40.0 37.0 41.0 33.0 41.0 30 37.6962112980696 40.0 37.0 41.0 33.0 41.0 31 37.621559348883494 40.0 37.0 41.0 33.0 41.0 32 37.59034698457508 40.0 37.0 41.0 33.0 41.0 33 37.514188084527355 40.0 36.0 41.0 33.0 41.0 34 37.468734831483495 40.0 36.0 41.0 32.0 41.0 35 37.306422819541616 39.0 36.0 41.0 32.0 41.0 36 37.164954253277415 39.0 36.0 41.0 31.0 41.0 37 37.09270997288707 39.0 36.0 41.0 31.0 41.0 38 36.82107801821745 39.0 35.0 41.0 31.0 41.0 39 36.64857276318328 39.0 35.0 41.0 30.0 41.0 40 36.22695147090184 39.0 35.0 41.0 29.0 41.0 41 35.935691582806136 39.0 35.0 41.0 27.0 41.0 42 35.639022309777914 39.0 35.0 41.0 25.0 41.0 43 35.3281588594291 39.0 35.0 40.0 23.0 41.0 44 34.85632381165145 39.0 34.0 40.0 21.0 41.0 45 34.232046061516904 38.0 34.0 40.0 15.0 41.0 46 34.059960193750825 38.0 33.0 40.0 15.0 41.0 47 33.884523289702166 38.0 33.0 40.0 14.0 41.0 48 33.74976288879637 38.0 33.0 40.0 13.0 41.0 49 33.59371223737522 38.0 33.0 40.0 13.0 41.0 50 33.31623627852189 38.0 33.0 40.0 13.0 41.0 51 32.12050326472171 36.0 30.0 40.0 11.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 4.0 9 2.0 10 4.0 11 6.0 12 8.0 13 12.0 14 15.0 15 32.0 16 59.0 17 117.0 18 175.0 19 385.0 20 654.0 21 1102.0 22 1822.0 23 2704.0 24 3700.0 25 5088.0 26 7251.0 27 9920.0 28 13809.0 29 18797.0 30 24641.0 31 31659.0 32 39127.0 33 47369.0 34 62577.0 35 68233.0 36 74398.0 37 109395.0 38 188364.0 39 273245.0 40 96.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 20.088853234765477 32.28225880154757 21.36417640667364 26.264711557013314 2 22.136133310316115 30.236501924307195 20.945398417904688 26.681966347472 3 20.42761253896849 30.71894960244524 21.378900657006206 27.474537201580063 4 19.910435939356397 30.55698284878703 20.52255856697503 29.010022644881545 5 18.62434883272236 33.01461254912314 18.289346751018005 30.07169186713649 6 21.093859479878553 36.2697888847142 19.068919646211807 23.56743198919545 7 86.96528123318136 3.65648831706896 4.939630573636484 4.438599876113204 8 88.64211947967546 3.264620165114697 3.9085268641408657 4.184733491068981 9 80.53027610508038 7.848533160027214 7.611320409841891 4.009870325050519 10 33.073204910791354 40.68970419488815 12.771510098804798 13.465580795515706 11 23.920306264406918 26.778638666896835 31.927759781471813 17.373295287224426 12 27.43919900078191 22.51256638605969 31.462676564070797 18.585558049087606 13 26.5694527656204 22.79374879413467 28.94218954679773 21.6946088934472 14 19.593712237375225 26.83733257511906 30.57048854047138 22.998466647034334 15 18.927262203357127 29.488205367750847 31.389156858961993 20.195375569930036 16 22.16842511449374 28.126466078373628 30.056358337479814 19.64875046965281 17 21.09913990068747 28.482589843313665 29.387268093057262 21.0310021629416 18 21.77198736760868 28.2393858464413 27.888745595418218 22.0998811905318 19 22.63685936817734 31.594991723955847 27.042761253896845 18.725387653969964 20 25.33566213430547 28.446337723529354 26.82220213857043 19.39579800359475 21 24.503081937914438 28.85161002061395 26.278623434913733 20.36668460655788 22 21.075174913939296 28.245884825898433 27.71946748987073 22.95947277029154 23 22.556231404287296 28.80408623333367 26.44637834215096 22.193304020228073 24 21.113153325141912 27.42894279882612 27.844979030636598 23.612924845395373 25 22.26773764432304 28.508991947358265 25.441067457375834 23.78220295094286 26 22.82624369142033 29.97278552352326 26.25780639134011 20.943164393716298 27 20.25853752652904 28.221716746042226 27.798775348558546 23.72097037887019 28 21.621596921108484 28.619779237791565 28.440143383734274 21.31848045736568 29 22.49012459762178 28.978441666582043 26.619312123643084 21.91212161215309 30 23.767580247164314 25.99205905947582 27.982879250992614 22.25748144236725 31 23.877250525503417 27.391472120393594 26.307056470038688 22.4242208840643 32 23.74920032088711 26.86546097058196 28.73310519207531 20.65223351645562 33 24.735928186276997 26.956345136427796 27.490276917452803 20.8174497598424 34 22.180813794083896 25.76723498888065 30.93920407810961 21.11274713892584 35 22.319932573088135 25.085451425205886 30.51159153914112 22.08302446256486 36 22.12567401525229 28.391807224021854 29.83935335154402 19.64316540918184 37 24.08816271819816 27.332981305279407 27.24362033774384 21.3352356387786 38 24.151121581689125 25.723976156869117 28.75575007362125 21.369152187820507 39 24.411791585852534 24.94552027376951 26.974420423042943 23.668267717335013 40 25.519258303969455 24.158128293916345 28.014561775846136 22.308051626268064 41 21.0838063710308 25.426952486367377 28.955695238482082 24.533545904119745 42 22.022502716370322 26.659118372818018 27.475146480904172 23.84323242990749 43 21.476791535079258 26.1343257816546 28.431004193872685 23.957878489393465 44 22.957848025427257 25.030920925698386 27.282106481716546 24.729124567157815 45 24.209409303695278 24.105730272043218 27.109477339886475 24.575383084375034 46 20.38770474323954 26.10599429308366 28.74366603369315 24.76263492998365 47 22.072362074393006 25.812829391634594 27.9150461529088 24.1997623810636 48 22.714237842338818 23.20511388446033 30.260263817947337 23.82038445525351 49 21.465418321029276 24.331975994394632 28.615920468738892 25.5866852158372 50 20.396640839993093 24.222711902271595 28.57641885922601 26.804228398509295 51 19.905663251317566 23.23110980228886 30.044782030321798 26.81844491607177 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 1136.0 1 929.0 2 722.0 3 568.5 4 415.0 5 469.5 6 524.0 7 563.0 8 602.0 9 759.0 10 916.0 11 1047.5 12 1179.0 13 1324.5 14 1470.0 15 1536.5 16 1603.0 17 1724.5 18 1846.0 19 2469.0 20 3092.0 21 3067.5 22 3043.0 23 3876.0 24 4709.0 25 5562.5 26 8596.0 27 10776.0 28 12483.5 29 14191.0 30 16174.0 31 18157.0 32 21556.0 33 24955.0 34 27931.0 35 30907.0 36 34588.5 37 38270.0 38 40404.0 39 42538.0 40 45760.0 41 48982.0 42 52461.0 43 55940.0 44 60845.0 45 65750.0 46 72296.5 47 78843.0 48 84750.0 49 90657.0 50 89716.0 51 88775.0 52 83971.0 53 79167.0 54 70579.0 55 61991.0 56 56382.5 57 50774.0 58 46220.5 59 41667.0 60 39589.0 61 37511.0 62 33968.5 63 30426.0 64 25349.5 65 20273.0 66 16076.0 67 11879.0 68 8837.0 69 5795.0 70 4872.5 71 3950.0 72 2952.0 73 1954.0 74 1550.0 75 1019.0 76 892.0 77 647.0 78 402.0 79 339.0 80 276.0 81 224.0 82 172.0 83 111.0 84 50.0 85 35.0 86 20.0 87 11.5 88 3.0 89 3.5 90 4.0 91 3.0 92 2.0 93 1.0 94 0.0 95 0.5 96 1.0 97 1.0 98 1.0 99 0.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 984770.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 37.49766031397544 #Duplication Level Percentage of deduplicated Percentage of total 1 80.75150342521542 30.27992445281552 2 8.322383943205828 6.241398522096313 3 2.6426487011725754 2.972794299772129 4 1.2093968712437417 1.8139821225073005 5 0.7408772012315055 1.389058081307391 6 0.5387908866301021 1.2122038588272732 7 0.4077908368262149 1.0703841594922836 8 0.35684756558530073 1.0704759038549343 9 0.2824087140568988 0.9530699426470992 >10 4.069052066514134 35.207998541367864 >50 0.6433694987076751 15.644185066950412 >100 0.033847179855235034 1.8292582392653602 >500 0.0010831097553030253 0.31526680909615956 >1k 0.0 0.0 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.5135209236674554 0.0 2 0.0 0.0 0.0 0.7774404175594302 0.0 3 0.0 0.0 0.0 1.0387197010469449 0.0 4 0.0 0.0 0.0 2.2582938147993947 0.0 5 0.0 0.0 0.0 2.5055596738324684 0.0 6 0.0 0.0 0.0 3.993419783299654 0.0 7 0.0 0.0 0.0 5.080780283721072 0.0 8 0.0 0.0 0.0 6.0716715578256855 0.0 9 0.0 0.0 0.0 7.305766828802665 0.0 10 0.0 0.0 0.0 9.13685429084964 0.0 11 0.0 0.0 0.0 10.710724331569809 0.0 12 0.0 0.0 0.0 11.489789493993522 0.0 13 0.0 0.0 0.0 11.831595194817064 0.0 14 0.0 0.0 0.0 12.18203235273211 0.0 15 0.0 0.0 0.0 12.47692354559948 0.0 16 0.0 0.0 0.0 13.07594666774983 0.0 17 0.0 0.0 0.0 13.813073103364237 0.0 18 0.0 0.0 0.0 14.719782284188186 0.0 19 0.0 0.0 0.0 15.200199031245875 0.0 20 0.0 0.0 0.0 15.744793200442743 0.0 21 0.0 0.0 0.0 16.293550778354337 0.0 22 0.0 0.0 0.0 16.968124536693846 0.0 23 0.0 0.0 0.0 17.577302314245966 0.0 24 0.0 0.0 0.0 18.023904058815763 0.0 25 0.0 0.0 0.0 18.414655198675835 0.0 26 0.0 0.0 0.0 18.791697553743514 0.0 27 0.0 0.0 0.0 19.216568335753525 0.0 28 0.0 0.0 0.0 19.627628786417134 0.0 29 0.0 0.0 0.0 20.08651766402307 0.0 30 0.0 0.0 0.0 20.732455294129593 0.0 31 0.0 0.0 0.0 21.17479208343065 0.0 32 0.0 0.0 0.0 21.627080435025437 0.0 33 0.0 0.0 0.0 22.05550534642607 0.0 34 0.0 0.0 0.0 22.464027133239235 0.0 35 0.0 0.0 0.0 22.906567015648324 0.0 36 0.0 0.0 0.0 23.363018775957837 0.0 37 0.0 0.0 0.0 23.820181362145476 0.0 38 0.0 0.0 0.0 24.27703930867106 0.0 39 0.0 0.0 0.0 24.748012226205105 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGTAACG 45 3.8380676E-10 45.000004 1 CTTACCG 45 3.8380676E-10 45.000004 1 CCTTACG 25 3.890397E-5 45.0 1 CGAACAT 20 7.032795E-4 45.0 14 CCGGATA 25 3.890397E-5 45.0 5 TACGGTT 20 7.032795E-4 45.0 24 CACGAAT 20 7.032795E-4 45.0 15 TCGATAG 20 7.032795E-4 45.0 1 CGTTATG 40 6.8139343E-9 45.0 1 ATCGTAC 25 3.890397E-5 45.0 28 CGTTACG 20 7.032795E-4 45.0 1 AAACGCG 25 3.890397E-5 45.0 1 TACGACC 20 7.032795E-4 45.0 18 TATTCGA 20 7.032795E-4 45.0 43 CTTGACG 20 7.032795E-4 45.0 1 CGTACTA 20 7.032795E-4 45.0 34 TCGTACT 25 3.890397E-5 45.0 29 CGTGTGA 20 7.032795E-4 45.0 39 AATTACG 35 1.2116834E-7 45.0 1 ATACGAG 25 3.890397E-5 45.0 1 >>END_MODULE