SRR3553544_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3553544_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	519977
Sequences flagged as poor quality	0
Sequence length	51
%GC	50

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTGTCTCTTATACACATCTGACGCGGTATCTGTCGTATGCCGTCTTCTGCT	3336	0.6415668385332428	TruSeq Adapter, Index 16 (95% over 22bp)
AATCTGTCTCTTATACACATCTGACGCGGTATCTGTCGTATGCCGTCTTCT	2812	0.5407931504662706	No Hit
AATGATACGGCTGTCTCTTATACACATCTGACGCGGTATCTGTCGTATGCC	2665	0.51252266927191	No Hit
AATGATACCTGTCTCTTATACACATCTGACGCGGTATCTGTCGTATGCCGT	2416	0.4646359358202382	No Hit
AATGACTGTCTCTTATACACATCTGACGCGGTATCTGTCGTATGCCGTCTT	683	0.13135196364454582	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	616	0.11846677833827264	No Hit
TGCAAAGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGG	609	0.11712056494806501	No Hit
AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	574	0.1103894979970268	No Hit
AATGATCTGTCTCTTATACACATCTGACGCGGTATCTGTCGTATGCCGTCT	564	0.10846633601101588	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GGTAATC	60	0.0	45.000004	8
TAAACCG	30	2.1631986E-6	45.000004	1
TCGATGG	30	2.1631986E-6	45.000004	1
CTAACCG	35	1.21021E-7	45.000004	1
TAACCGG	60	0.0	45.000004	2
CGTGGTC	20	7.029719E-4	45.0	37
CAGGTCG	20	7.029719E-4	45.0	27
CAGGTAA	40	6.8030204E-9	45.0	5
CGGGTAT	55	1.8189894E-12	45.0	6
CTATGCG	20	7.029719E-4	45.0	1
ACCGGCG	25	3.887849E-5	45.0	20
CTCAACG	40	6.8030204E-9	45.0	1
ACGTTTG	20	7.029719E-4	45.0	20
ACGCATG	20	7.029719E-4	45.0	1
CCGATGT	20	7.029719E-4	45.0	12
TTTCGTG	20	7.029719E-4	45.0	15
ATAGCGA	20	7.029719E-4	45.0	28
TTATCGT	20	7.029719E-4	45.0	22
AGTGATA	25	3.887849E-5	45.0	40
AATTGCG	40	6.8030204E-9	45.0	1