SRR3553543_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3553543_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	525100
Sequences flagged as poor quality	0
Sequence length	51
%GC	50

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTGTCTCTTATACACATCTGACGCGGTATCTGTCGTATGCCGTCTTCTGCT	3150	0.5998857360502761	TruSeq Adapter, Index 16 (95% over 22bp)
AATGATACGGCTGTCTCTTATACACATCTGACGCGGTATCTGTCGTATGCC	2827	0.538373643115597	No Hit
AATCTGTCTCTTATACACATCTGACGCGGTATCTGTCGTATGCCGTCTTCT	2783	0.5299942868025138	No Hit
AATGATACCTGTCTCTTATACACATCTGACGCGGTATCTGTCGTATGCCGT	2408	0.4585793182251	No Hit
AATGACTGTCTCTTATACACATCTGACGCGGTATCTGTCGTATGCCGTCTT	721	0.13730717958484098	No Hit
TGCAAAGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGG	638	0.12150066653970672	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	626	0.11921538754522949	No Hit
AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	561	0.10683679299181108	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CATATCG	20	7.0297817E-4	45.000004	1
CTCGTAA	20	7.0297817E-4	45.000004	33
CTCAACG	30	2.1632404E-6	45.000004	1
CTATACG	20	7.0297817E-4	45.000004	1
TAAACCG	30	2.1632404E-6	45.000004	1
CTAAGCG	20	7.0297817E-4	45.000004	1
CGACACG	40	6.8030204E-9	45.000004	1
ATCGTAG	30	2.1632404E-6	45.000004	1
ATTCCCG	20	7.0297817E-4	45.000004	1
ACGATAA	20	7.0297817E-4	45.000004	17
TCAATCG	20	7.0297817E-4	45.000004	1
TACGACG	20	7.0297817E-4	45.000004	1
CATACCG	20	7.0297817E-4	45.000004	1
CATCGCG	40	6.8030204E-9	45.000004	1
CGTAACG	30	2.1632404E-6	45.000004	1
ACGAGTA	20	7.0297817E-4	45.000004	26
ATACACG	40	6.8030204E-9	45.000004	1
GTGCCGT	20	7.0297817E-4	45.000004	43
GGTAATC	75	0.0	45.0	8
TACGCGG	25	3.8879018E-5	45.0	2