SRR3553542_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3553542_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	962772
Sequences flagged as poor quality	0
Sequence length	51
%GC	50

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTGTCTCTTATACACATCTGACGCGAGCAATCTCGTATGCCGTCTTCTGCT	4130	0.42896968337259495	TruSeq Adapter, Index 4 (96% over 27bp)
TGCAAAGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGG	1273	0.1322223745601243	No Hit
AATCTGTCTCTTATACACATCTGACGCGAGCAATCTCGTATGCCGTCTTCT	1006	0.10448995193046745	TruSeq Adapter, Index 4 (95% over 24bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GTCGAAC	35	1.211647E-7	45.000004	8
TCGAACA	35	1.211647E-7	45.000004	9
TCGCAAC	20	7.032715E-4	45.0	16
CGTATTA	25	3.8903323E-5	45.0	38
CAACGGC	20	7.032715E-4	45.0	14
ATTACCG	40	6.8139343E-9	45.0	1
CCGCTTA	20	7.032715E-4	45.0	40
AAACGTT	20	7.032715E-4	45.0	17
AAACGCG	25	3.8903323E-5	45.0	1
TCGTGAT	20	7.032715E-4	45.0	27
AATTCGG	20	7.032715E-4	45.0	11
CGGTAAT	50	2.1827873E-11	45.0	6
TATACGC	20	7.032715E-4	45.0	43
TATCGGC	20	7.032715E-4	45.0	34
TAAGACG	25	3.8903323E-5	45.0	1
CGATACG	25	3.8903323E-5	45.0	1
CTTACCG	40	6.8139343E-9	45.0	1
CTAGCGA	20	7.032715E-4	45.0	31
ATAGGCG	30	2.165134E-6	44.999996	1
CGAAACG	30	2.165134E-6	44.999996	1