SRR3553534_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3553534_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1429557
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTGTCTCTTATACACATCTGACGCTGCAGCTTTCGTATGCCGTCTTCTGCT	4288	0.2999530623822625	TruSeq Adapter, Index 19 (95% over 22bp)
AATCTGTCTCTTATACACATCTGACGCTGCAGCTTTCGTATGCCGTCTTCT	2309	0.16151856833970243	No Hit
ATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCATA	1860	0.1301102369475299	No Hit
AATGATACGGCTGTCTCTTATACACATCTGACGCTGCAGCTTTCGTATGCC	1784	0.1247939046851577	No Hit
AATGATACCTGTCTCTTATACACATCTGACGCTGCAGCTTTCGTATGCCGT	1696	0.11863815153925307	No Hit
TGCAAAGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGG	1560	0.10912471485921864	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TATCGCG	65	0.0	45.000004	1
CGTATAC	25	3.8912844E-5	45.0	24
GCGATAT	25	3.8912844E-5	45.0	10
CAATGCG	40	6.8175723E-9	45.0	1
TCGAGTG	20	7.0338644E-4	45.0	29
CGCACGA	25	3.8912844E-5	45.0	39
TATAGCG	110	0.0	42.954548	1
TACGCGG	95	0.0	42.63158	2
CCCGATC	155	0.0	42.09677	41
TAATACG	55	6.184564E-11	40.909092	1
CGATACG	55	6.184564E-11	40.909092	1
CGGGTAT	265	0.0	40.75472	6
TTACCGG	195	0.0	40.384617	2
GACCGAT	240	0.0	40.312496	9
ACGTAAG	95	0.0	40.263157	1
TTACCCG	95	0.0	40.263157	1
TCACGCG	140	0.0	40.178574	1
GATCGTA	45	1.9288564E-8	40.0	9
CGTAACG	45	1.9288564E-8	40.0	1
CAACGTA	40	3.4590084E-7	39.375	19