Basic Statistics
Measure | Value |
---|---|
Filename | SRR3553534_1.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 1429557 |
Sequences flagged as poor quality | 0 |
Sequence length | 51 |
%GC | 49 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
CTGTCTCTTATACACATCTGACGCTGCAGCTTTCGTATGCCGTCTTCTGCT | 4288 | 0.2999530623822625 | TruSeq Adapter, Index 19 (95% over 22bp) |
AATCTGTCTCTTATACACATCTGACGCTGCAGCTTTCGTATGCCGTCTTCT | 2309 | 0.16151856833970243 | No Hit |
ATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCATA | 1860 | 0.1301102369475299 | No Hit |
AATGATACGGCTGTCTCTTATACACATCTGACGCTGCAGCTTTCGTATGCC | 1784 | 0.1247939046851577 | No Hit |
AATGATACCTGTCTCTTATACACATCTGACGCTGCAGCTTTCGTATGCCGT | 1696 | 0.11863815153925307 | No Hit |
TGCAAAGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGG | 1560 | 0.10912471485921864 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATCGCG | 65 | 0.0 | 45.000004 | 1 |
CGTATAC | 25 | 3.8912844E-5 | 45.0 | 24 |
GCGATAT | 25 | 3.8912844E-5 | 45.0 | 10 |
CAATGCG | 40 | 6.8175723E-9 | 45.0 | 1 |
TCGAGTG | 20 | 7.0338644E-4 | 45.0 | 29 |
CGCACGA | 25 | 3.8912844E-5 | 45.0 | 39 |
TATAGCG | 110 | 0.0 | 42.954548 | 1 |
TACGCGG | 95 | 0.0 | 42.63158 | 2 |
CCCGATC | 155 | 0.0 | 42.09677 | 41 |
TAATACG | 55 | 6.184564E-11 | 40.909092 | 1 |
CGATACG | 55 | 6.184564E-11 | 40.909092 | 1 |
CGGGTAT | 265 | 0.0 | 40.75472 | 6 |
TTACCGG | 195 | 0.0 | 40.384617 | 2 |
GACCGAT | 240 | 0.0 | 40.312496 | 9 |
ACGTAAG | 95 | 0.0 | 40.263157 | 1 |
TTACCCG | 95 | 0.0 | 40.263157 | 1 |
TCACGCG | 140 | 0.0 | 40.178574 | 1 |
GATCGTA | 45 | 1.9288564E-8 | 40.0 | 9 |
CGTAACG | 45 | 1.9288564E-8 | 40.0 | 1 |
CAACGTA | 40 | 3.4590084E-7 | 39.375 | 19 |