SRR3553531_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3553531_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	487960
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTGTCTCTTATACACATCTGACGCTACGAAGGTCGTATGCCGTCTTCTGCT	5719	1.1720222969095826	Illumina Single End Adapter 1 (95% over 22bp)
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1144	0.2344454463480613	No Hit
AATGATACGGCTGTCTCTTATACACATCTGACGCTACGAAGGTCGTATGCC	1069	0.21907533404377405	No Hit
AATCTGTCTCTTATACACATCTGACGCTACGAAGGTCGTATGCCGTCTTCT	1059	0.21702598573653578	No Hit
CCTGTCTCTTATACACATCTGACGCTACGAAGGTCGTATGCCGTCTTCTGC	946	0.193868349864743	Illumina Single End Adapter 1 (95% over 21bp)
AATGATACCTGTCTCTTATACACATCTGACGCTACGAAGGTCGTATGCCGT	930	0.19058939257316174	No Hit
AAACTGTCTCTTATACACATCTGACGCTACGAAGGTCGTATGCCGTCTTCT	879	0.1801377162062464	No Hit
AACCTGTCTCTTATACACATCTGACGCTACGAAGGTCGTATGCCGTCTTCT	621	0.12726452987949832	No Hit
ACCTGTCTCTTATACACATCTGACGCTACGAAGGTCGTATGCCGTCTTCTG	619	0.12685466021805067	No Hit
AAAAACTGTCTCTTATACACATCTGACGCTACGAAGGTCGTATGCCGTCTT	594	0.12173128944995493	No Hit
TGCAAAGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGG	499	0.1022624805311911	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCGCCAA	20	7.029291E-4	45.000004	40
CAGCGTG	20	7.029291E-4	45.000004	30
AACGTAG	45	3.8380676E-10	45.000004	1
CGAACAG	45	3.8380676E-10	45.000004	1
ACTGCGC	20	7.029291E-4	45.000004	20
GTCGACG	20	7.029291E-4	45.000004	13
TTTACGG	20	7.029291E-4	45.000004	2
AGATACT	20	7.029291E-4	45.000004	18
CGTGCCC	20	7.029291E-4	45.000004	41
CCTAGCG	45	3.8380676E-10	45.000004	1
GAGTCCG	20	7.029291E-4	45.000004	9
GCGAAAG	40	6.8012014E-9	45.000004	1
GACGTCA	20	7.029291E-4	45.000004	40
CGTGACG	20	7.029291E-4	45.000004	37
GAACTAC	40	6.8012014E-9	45.000004	19
CGTTGAT	20	7.029291E-4	45.000004	25
TAGCGGA	20	7.029291E-4	45.000004	3
CCAATTA	20	7.029291E-4	45.000004	30
CGACCTA	20	7.029291E-4	45.000004	17
ACCGAGG	20	7.029291E-4	45.000004	2