SRR3553530_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3553530_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1268282
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTGTCTCTTATACACATCTGACGCGTGGTTCTTCGTATGCCGTCTTCTGCT	5965	0.4703212692445371	No Hit
AATCTGTCTCTTATACACATCTGACGCGTGGTTCTTCGTATGCCGTCTTCT	1795	0.14153003827224545	No Hit
ATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCATA	1696	0.13372420329232773	No Hit
CCTGTCTCTTATACACATCTGACGCGTGGTTCTTCGTATGCCGTCTTCTGC	1424	0.11227786880204876	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTAAGCG	30	2.1656797E-6	45.000004	1
CGTAACG	60	0.0	45.000004	1
TAATCCG	30	2.1656797E-6	45.000004	1
TTTACGC	25	3.891035E-5	45.0	6
ACGCATG	40	6.8157533E-9	45.0	1
GCGCGAA	20	7.033564E-4	45.0	19
TGGCGTA	20	7.033564E-4	45.0	11
CGGCACG	25	3.891035E-5	45.0	1
TATGCGT	20	7.033564E-4	45.0	28
TCTAGCG	70	0.0	45.0	1
CGAATCG	20	7.033564E-4	45.0	1
CGAATAG	40	6.8157533E-9	45.0	1
CGTACCG	25	3.891035E-5	45.0	1
CCGACAA	20	7.033564E-4	45.0	39
GCGCTAT	25	3.891035E-5	45.0	9
CACTACG	115	0.0	43.043476	1
CAACCCG	100	0.0	42.75	1
GGCCGAT	160	0.0	42.1875	8
CTTACCG	60	3.6379788E-12	41.250004	1
TAATACG	55	6.184564E-11	40.90909	1