SRR3553529_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3553529_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1285393
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTGTCTCTTATACACATCTGACGCGTGGTTCTTCGTATGCCGTCTTCTGCT	6217	0.48366530703061245	No Hit
AATCTGTCTCTTATACACATCTGACGCGTGGTTCTTCGTATGCCGTCTTCT	1799	0.13995719597041528	No Hit
ATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCATA	1737	0.13513376842724364	No Hit
CCTGTCTCTTATACACATCTGACGCGTGGTTCTTCGTATGCCGTCTTCTGC	1479	0.11506208607017464	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TGCGAAC	25	3.8910635E-5	45.000004	28
CGATCTA	25	3.8910635E-5	45.000004	30
TCGACTA	25	3.8910635E-5	45.000004	17
AGTCGAC	25	3.8910635E-5	45.000004	15
TCGCACG	45	3.8562575E-10	45.0	1
ACGCATG	45	3.8562575E-10	45.0	1
GACACGC	20	7.0335995E-4	45.0	9
TACGAGC	20	7.0335995E-4	45.0	21
TGCGACG	40	6.8157533E-9	45.0	1
CGTACCG	40	6.8157533E-9	45.0	1
TTCGCAC	20	7.0335995E-4	45.0	17
AGTCGAA	20	7.0335995E-4	45.0	27
CGCAATG	140	0.0	41.785717	1
AACCGCG	65	0.0	41.53846	1
CTTACCG	65	0.0	41.53846	1
CGCACTG	105	0.0	40.714283	1
ATTCGCG	100	0.0	40.500004	1
CGATTAG	50	1.0822987E-9	40.500004	1
CCGCTCG	50	1.0822987E-9	40.500004	1
CTAACCG	100	0.0	40.500004	1