SRR3553526_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3553526_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1197040
Sequences flagged as poor quality	0
Sequence length	51
%GC	51

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTGTCTCTTATACACATCTGACGCGCAGGATATCGTATGCCGTCTTCTGCT	3542	0.2958965448105326	Illumina Paired End PCR Primer 2 (95% over 23bp)
AATCTGTCTCTTATACACATCTGACGCGCAGGATATCGTATGCCGTCTTCT	1376	0.11495021051928088	RNA PCR Primer, Index 23 (95% over 21bp)
TGCAAAGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGG	1318	0.1101049254828577	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGCATAG	65	0.0	45.000004	1
TATCACG	25	3.890904E-5	45.0	1
TCGCATA	20	7.0334045E-4	45.0	20
CGTATAG	45	3.8562575E-10	45.0	1
CGCATAA	20	7.0334045E-4	45.0	21
ATTAACG	35	1.2119926E-7	45.0	1
CATTCCG	35	1.2119926E-7	45.0	1
GTAATCG	20	7.0334045E-4	45.0	34
AATTGCG	25	3.890904E-5	45.0	1
CGTAATC	20	7.0334045E-4	45.0	33
TATAGCG	35	1.2119926E-7	45.0	1
CGCTTAG	25	3.890904E-5	45.0	1
CGCTAAG	85	0.0	42.35294	1
TACGGGT	190	0.0	41.44737	4
TCACACG	110	0.0	40.90909	1
CGAATAG	55	6.184564E-11	40.90909	1
CAGTACG	45	1.9284926E-8	40.0	1
AATCCCG	40	3.45839E-7	39.375	1
CGTAGCG	40	3.45839E-7	39.375	1
TACGACG	40	3.45839E-7	39.375	1