SRR3553524_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3553524_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	950390
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTGTCTCTTATACACATCTGACGCCAAGCTGATCGTATGCCGTCTTCTGCT	3220	0.3388082787066362	Illumina Single End Adapter 1 (95% over 21bp)
TGCAAAGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGG	1022	0.10753480150254106	No Hit
ATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCATA	1014	0.10669304180389104	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TATCACG	40	6.8121153E-9	45.000004	1
CGACCTA	20	7.032669E-4	45.000004	33
TAACGCC	35	1.2116288E-7	45.000004	12
TCGATAG	40	6.8121153E-9	45.000004	1
GGACGTA	20	7.032669E-4	45.000004	8
CGTACTA	20	7.032669E-4	45.000004	15
TACGTCC	20	7.032669E-4	45.000004	13
CGGGTTA	85	0.0	45.0	6
CGATTAG	55	1.8189894E-12	45.0	1
ATACTCG	25	3.890294E-5	45.0	44
AATTGCG	75	0.0	45.0	1
TGTACCG	25	3.890294E-5	45.0	1
CATACCG	65	0.0	44.999996	1
AATGCGG	165	0.0	42.272728	2
ATCAGCG	80	0.0	42.187504	1
CGATAGG	155	0.0	42.09677	2
CACCACG	70	0.0	41.785717	1
ACGATAG	65	0.0	41.53846	1
TAGCCCG	55	6.002665E-11	40.909092	1
TTTGCGC	55	6.002665E-11	40.909092	13